PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01026495001
Common NameVIT_04s0044g01220
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family NAC
Protein Properties Length: 561aa    MW: 62640.2 Da    PI: 4.8558
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01026495001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM161.92.4e-5061341129
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                        lppGfrFhP d+elv++yLkkkv gkk+++ evi+e+diyk+ P+dLp k ++k++++ewyfF++r++kya+g r nr+t+sgyWk+tgkd+
  GSVIVT01026495001   6 LPPGFRFHPMDDELVMYYLKKKVMGKKMPF-EVISELDIYKFVPQDLPdKsCLKSRDREWYFFCPRARKYASGGRMNRTTESGYWKTTGKDR 96 
                        79****************************.99**************96358899999********************************** PP

                NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                        +v+  ++++vg  +tL+f++grapkg +tdWvmheyrle
  GSVIVT01026495001  97 QVVY-ENRTVGQIRTLIFHQGRAPKGDRTDWVMHEYRLE 134
                        ****.9999****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.06E-583156IPR003441NAC domain
PROSITE profilePS5100555.216156IPR003441NAC domain
PfamPF023652.9E-257133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 561 aa     Download sequence    Send to blast
MGKTSLPPGF RFHPMDDELV MYYLKKKVMG KKMPFEVISE LDIYKFVPQD LPDKSCLKSR  60
DREWYFFCPR ARKYASGGRM NRTTESGYWK TTGKDRQVVY ENRTVGQIRT LIFHQGRAPK  120
GDRTDWVMHE YRLEDKVLVD RGIVQDAFVL CKIFQKSGPG PKNGAQYGAP FNEEEWNSED  180
EADHIESLPF SSIDVPDTPS GFPSNSGPSQ SLPSADMVLP SVPDGDIFEL PVDNELMSML  240
DMFEDSNEND ENEVDKPSHA QNVDNALPNV DDALTGEGND IFKDLGDLGK LAEMNEDGFN  300
FSSSHKGNHS LDQWPPADSF LELRDLDHPL KITVEGSGSG FVPPGGVCMD CDCCNNSEHF  360
DHPFNDFGVR HHASASIPNP PVLADRSYGF ENLMDVFSKR CVGENAKQGY GGYESASYST  420
EQSEPDSGHV AQTHKRGEQQ TKYYSRFQQL LESIPSRPAS AAEHPGSSNG LRKNTRTVLC  480
ASVGVGGCTE EALSDKLELS CLGYCGCNLH RRREFRKEAA LWDGNFMFVL FLGMLSALMW  540
VFIAAILMKL GRFAWDLLLA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-46515614168Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.48410.0fruit
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00583DAPTransfer from AT5G64060Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4855020.0AM485502.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X122521.13, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003631915.20.0PREDICTED: NAC domain-containing protein 82
TrEMBLD7U4E80.0D7U4E8_VITVI; Uncharacterized protein
STRINGVIT_04s0044g01220.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64060.17e-87NAC domain containing protein 103