PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01026482001
Common NameLOC100854518, VIT_04s0044g01370
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family GRAS
Protein Properties Length: 332aa    MW: 36944.9 Da    PI: 4.8996
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01026482001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS171.75.7e-53190331232374
               GRAS 232 kslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaG 323
                          l Pk+v+vveq++++n+++F+ rf+ea +yysa+f+sl+a+lpre+ +ri+vE+++l+r+ivn+vaceg+er+er e ++kWr+r+++aG
  GSVIVT01026482001 190 SALTPKLVTVVEQDVNTNTAPFFPRFIEAYNYYSAVFESLDATLPRENPDRINVEKHCLARDIVNIVACEGEERIERYEVAGKWRARMTMAG 281
                        5799**************************************************************************************** PP

               GRAS 324 FkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                        F+p pls++++++++ ll+++ ++ y+v++e g+l +gW+d+ L+++SaWr
  GSVIVT01026482001 282 FRPCPLSSSVNNSIQELLKQYCNR-YKVKQEGGALHFGWEDKILIVASAWR 331
                        **********************77.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098523.0821312IPR005202Transcription factor GRAS
PfamPF035142.0E-50190331IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MSLIRPADSS APSYGESRIY QAKGSSNPSG LSTQMYSSNK QKFKHVTESN HLDSYNQQSF  60
PESSTAELHA LQANVYHPSN SGVPGGAFCP QVSCSSATAH NSYLEKILDP IDSGEDNIRL  120
KLRELESALL NDNDEDDYYY NGGISGPEHN MNIDSEWADS IKDILLLPNS PKDSSSDSNL  180
SYICSNKETS ALTPKLVTVV EQDVNTNTAP FFPRFIEAYN YYSAVFESLD ATLPRENPDR  240
INVEKHCLAR DIVNIVACEG EERIERYEVA GKWRARMTMA GFRPCPLSSS VNNSIQELLK  300
QYCNRYKVKQ EGGALHFGWE DKILIVASAW R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-21191331231375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.178010.0cell culture
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4340290.0AM434029.2 Vitis vinifera contig VV78X234593.4, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010649367.11e-133PREDICTED: scarecrow-like protein 1
RefseqXP_019075083.11e-133PREDICTED: scarecrow-like protein 1
RefseqXP_019075084.11e-133PREDICTED: scarecrow-like protein 1
RefseqXP_019075085.11e-133PREDICTED: scarecrow-like protein 1
TrEMBLA0A438HQY51e-131A0A438HQY5_VITVI; Scarecrow-like protein 1
TrEMBLF6I0E11e-131F6I0E1_VITVI; Uncharacterized protein
STRINGVIT_04s0044g01370.t011e-132(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1080229
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.11e-76SCARECROW-like 1