PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01026481001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MYB
Protein Properties Length: 345aa    MW: 39566.4 Da    PI: 9.7436
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01026481001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.62.5e-171762147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                       rg W + Ede+l ++v q+G+++W++Ia ++  gR++k+c++rw++ 
  GSVIVT01026481001 17 RGHWRPAEDEKLRQLVDQYGPHNWNSIADKLE-GRSGKSCRLRWFNQ 62
                       899*****************************.***********996 PP
2Myb_DNA-binding59.38.5e-1969112146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        r+++T+eE+e+l+ a++ +G++ W++Iar ++ gRt++ +k++++ 
  GSVIVT01026481001  69 RKPFTEEEEERLLAAHRIHGNK-WSLIARLFP-GRTDNAVKNHYHV 112
                        789*******************.*********.***********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.4941263IPR017930Myb domain
SMARTSM007171.6E-141665IPR001005SANT/Myb domain
SuperFamilySSF466894.87E-2916110IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-261870IPR009057Homeodomain-like
CDDcd001672.34E-132061No hitNo description
PfamPF139211.2E-162080No hitNo description
PROSITE profilePS5129425.04364118IPR017930Myb domain
SMARTSM007175.9E-1668116IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.6E-2171116IPR009057Homeodomain-like
CDDcd001674.82E-780111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MEDSAGGSSD DGRNCQRGHW RPAEDEKLRQ LVDQYGPHNW NSIADKLEGR SGKSCRLRWF  60
NQLDPRINRK PFTEEEEERL LAAHRIHGNK WSLIARLFPG RTDNAVKNHY HVIMARRHRE  120
RLRQCSKRSC QDHPNDSNTN PSSFFLKFSR PQLEYNTKLG FPDFQNHERN GIFPVSFSKS  180
LPSWTHSGST NNPNSLRLDK IFGASSSSCS KEPSHNGLDQ SLSSYYSNSS SYGSYRNLSS  240
LGMPYLGDDR GIHGAMKNKL VKLSDNSTTF PKLRIITEQK QEESIKSTDL FSFSYTCSCL  300
CPLNLRLVNW NFRNNTQRCL QHSFVVIHIY IIRAAILMFN LITV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-30171177107B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.302300.0bud
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4569890.0AM456989.1 Vitis vinifera contig VV78X104387.6, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002274206.20.0PREDICTED: transcription factor MYB44
TrEMBLF6I0E00.0F6I0E0_VITVI; Uncharacterized protein
STRINGVIT_04s0044g01380.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17950.18e-63myb domain protein 52