PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01026334001 | ||||||||
Common Name | VIT_04s0043g00510 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | ERF | ||||||||
Protein Properties | Length: 45aa MW: 5173.85 Da PI: 10.4231 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 40.5 | 6.8e-13 | 7 | 44 | 2 | 43 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAa 43 +y+GV ++ +g+Wv+eIr+p + ++lg+f tae+Aa GSVIVT01026334001 7 RYRGVQ-HRHWGSWVSEIRHP-----LlkTGIWLGTFETAEDAA 44 69***6.777**********8.....334*************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.47E-15 | 6 | 44 | No hit | No description |
SMART | SM00380 | 9.0E-6 | 7 | 44 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.2E-19 | 7 | 44 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.1E-5 | 7 | 44 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 14.855 | 7 | 44 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.37E-11 | 7 | 44 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 7.6E-9 | 8 | 19 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.6E-9 | 30 | 44 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 45 aa Download sequence Send to blast |
MARPQQRYRG VQHRHWGSWV SEIRHPLLKT GIWLGTFETA EDAA* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.1835 | 2e-55 | bud| cell culture| flower| fruit| inflorescence| leaf |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM433495 | 1e-37 | AM433495.2 Vitis vinifera contig VV78X261825.13, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008808223.1 | 2e-23 | ethylene-responsive transcription factor ERF003-like | ||||
Refseq | XP_009601361.1 | 3e-23 | PREDICTED: ethylene-responsive transcription factor ERF003-like isoform X2 | ||||
Refseq | XP_009771670.1 | 2e-23 | PREDICTED: ethylene-responsive transcription factor ERF003-like | ||||
Refseq | XP_010089946.1 | 3e-23 | ethylene-responsive transcription factor ERF003 | ||||
Refseq | XP_016497010.1 | 2e-23 | PREDICTED: ethylene-responsive transcription factor ERF003-like | ||||
Refseq | XP_016512703.1 | 3e-23 | PREDICTED: ethylene-responsive transcription factor ERF003-like isoform X2 | ||||
Refseq | XP_019247900.1 | 1e-23 | PREDICTED: ethylene-responsive transcription factor ERF003 | ||||
Refseq | XP_022842116.1 | 1e-23 | ethylene-responsive transcription factor ERF003-like | ||||
Swissprot | Q94AW5 | 1e-23 | ERF03_ARATH; Ethylene-responsive transcription factor ERF003 | ||||
TrEMBL | D7TDS3 | 1e-24 | D7TDS3_VITVI; Uncharacterized protein | ||||
STRING | VIT_04s0043g00510.t01 | 2e-25 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25190.1 | 6e-26 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01026334001 |
Publications ? help Back to Top | |||
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