PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01026207001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 219aa MW: 25844.2 Da PI: 8.788 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 85.8 | 2.5e-27 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rien++ rqvtfskRr+g+lKK +ELSvLCd+++ +iifsstgk+ ey++ GSVIVT01026207001 10 RIENQTSRQVTFSKRRAGLLKKTHELSVLCDVQIGLIIFSSTGKMCEYCT 59 8***********************************************96 PP | |||||||
2 | K-box | 78.1 | 2.2e-26 | 71 | 170 | 1 | 99 |
K-box 1 yqkssgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeen 91 yqk +g++ e+ e+ ++el++++ke++ Lqr+ R + GedL+s+ +++L qLeqqLe+s k+R++Kn+ll +q+++l++ke++l+een GSVIVT01026207001 71 YQKVTGTRiPEHDSREQIYNELTRMRKETSRLQRSMRGYTGEDLSSIPYEDLDQLEQQLEHSADKVRARKNQLLQQQLDNLRRKEQMLEEEN 162 67777888766677899*************************************************************************** PP K-box 92 kaLrkkle 99 ++ + ++ GSVIVT01026207001 163 SKMYHWIK 170 99877665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 6.4E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 29.688 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.58E-31 | 2 | 80 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 6.24E-40 | 2 | 76 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-26 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.0E-24 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-26 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-26 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 8.2E-26 | 81 | 169 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 15.722 | 85 | 175 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MGRGKIAIRR IENQTSRQVT FSKRRAGLLK KTHELSVLCD VQIGLIIFSS TGKMCEYCTE 60 PWRMDQIIER YQKVTGTRIP EHDSREQIYN ELTRMRKETS RLQRSMRGYT GEDLSSIPYE 120 DLDQLEQQLE HSADKVRARK NQLLQQQLDN LRRKEQMLEE ENSKMYHWIK ENRAALDYQQ 180 AAIEVKPVEH HHQMLDQAET LTGEVSQGGS EVWRRRHF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 5e-19 | 1 | 71 | 1 | 69 | MEF2C |
5f28_B | 5e-19 | 1 | 71 | 1 | 69 | MEF2C |
5f28_C | 5e-19 | 1 | 71 | 1 | 69 | MEF2C |
5f28_D | 5e-19 | 1 | 71 | 1 | 69 | MEF2C |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.22782 | 0.0 | flower |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed during seed development. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in buds, flowers and immature seeds, but not in roots, stems, leaves, seedlings or siliques valves. Expression in seed coat is confined to the endothelium layer. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the developmental regulation of the endothelium and in the accumulation of proanthocyanidins (PAs) or condensed tannins which give the seed its brown pigmentation after oxidation (PubMed:12368498, PubMed:16080001). Necessary for the normal activation of the BANYULS promoter in the endothelium body (PubMed:12368498). Is required, together with AGL11/STK for the maternal control of endothelium formation, which is essential for female gametophyte development and fertilization, and seed formation (PubMed:22176531). Interacts genetically with AGL1/SHP1 and AGL5/SHP2 in a partially antagonistic manner and represses AGL1/SHP1, AGL5/SHP2, and AGL8/FUL during flower development. Is essential for the coordination of cell divisions in ovule, seed coat development and endosperm formation (PubMed:27776173). Mediates the crosstalk between endothelium and nucellus to ensure proper seed formation. Functions redundantly with AGL63/GOA to repress nucellus growth and promote its degeneration. Represses the negative regulator of autophagy and programmed cell death HVA22D in the proximal nucellus (PubMed:27233529). Binds specifically to the CArG box DNA sequence 5'-CC (A/T)6 GG-3' (PubMed:16080001). {ECO:0000269|PubMed:12368498, ECO:0000269|PubMed:16080001, ECO:0000269|PubMed:22176531, ECO:0000269|PubMed:27233529, ECO:0000269|PubMed:27776173}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM455604 | 1e-100 | AM455604.2 Vitis vinifera contig VV78X152709.17, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002271905.2 | 1e-144 | PREDICTED: protein TRANSPARENT TESTA 16 isoform X1 | ||||
Refseq | XP_010655915.1 | 1e-144 | PREDICTED: protein TRANSPARENT TESTA 16 isoform X1 | ||||
Refseq | XP_010655916.1 | 1e-144 | PREDICTED: protein TRANSPARENT TESTA 16 isoform X1 | ||||
Swissprot | Q8RYD9 | 2e-78 | TT16_ARATH; Protein TRANSPARENT TESTA 16 | ||||
TrEMBL | F6HIR2 | 1e-143 | F6HIR2_VITVI; Uncharacterized protein | ||||
STRING | VIT_10s0042g00820.t01 | 1e-144 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23260.2 | 8e-73 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01026207001 |