PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01026056001
Common NameLOC100252707, VIT_18s0041g00690
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family bHLH
Protein Properties Length: 182aa    MW: 20155.7 Da    PI: 8.9523
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01026056001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.11.5e-13117162655
                        HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +++Er RR ri +++ +L+el+P+     +k  + a++Le+AveY+k Lq
  GSVIVT01026056001 117 SIAERVRRTRISDRIRKLQELVPNM----DKQTNTADMLEEAVEYVKFLQ 162
                        689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.958111161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.28E-16114172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.39E-12115166No hitNo description
Gene3DG3DSA:4.10.280.102.8E-17116173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.7E-13117167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-10117162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MFDGAGAQGF LRQSSLPTEF LSQINSSEGY FSSFGIPAGF DYAASPAVDG SPTGKRAREL  60
ESRSSSRKFS SQSKGEQSSR LTGSVASLLD VDMEKLLEDS VPCRVRAKRG CATHPRSIAE  120
RVRRTRISDR IRKLQELVPN MDKQTNTADM LEEAVEYVKF LQQKIQELSE HQKKCTCLAR  180
E*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.94150.0cell culture| leaf| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3824570.0FQ382457.1 Vitis vinifera clone SS0ABG57YA04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002271390.11e-130PREDICTED: transcription factor bHLH80 isoform X2
SwissprotQ9M0R02e-74BH081_ARATH; Transcription factor bHLH81
TrEMBLF6I3Y81e-129F6I3Y8_VITVI; Uncharacterized protein
STRINGVIT_18s0041g00690.t011e-129(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5111580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35460.15e-58bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Vidal EA, et al.
    Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots.
    BMC Genomics, 2013. 14: p. 701
    [PMID:24119003]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]