PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01025916001 | ||||||||
Common Name | LOC100253426, VIT_18s0041g02140 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 199aa MW: 22651.5 Da PI: 8.0708 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 78.9 | 3.5e-25 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien rqvtf+kRr+g+lKKA+ELSvLCdae+ + ifs +gklye + GSVIVT01025916001 9 KRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGIFIFSAHGKLYELA 58 79*********************************************965 PP | |||||||
2 | K-box | 60.4 | 7.3e-21 | 78 | 172 | 5 | 99 |
K-box 5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 ++ +++ea+ ++e++ Lk eie Lq+ +R +lG + ++++l eL+ e++Le + +iRs K+e+++++i+ l++ke l+ +n++L++ GSVIVT01025916001 78 QDDQAKEAQLLDTKEEINMLKHEIELLQKGLRYMLGGGAGTMTLDELHIFEKHLEIWIYNIRSAKMEIMFQEIQLLKNKEGILKAANNYLQE 169 4445788888999******************************************************************************9 PP K-box 97 kle 99 +++ GSVIVT01025916001 170 MID 172 987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.6E-35 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 29.801 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.44E-27 | 1 | 75 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.68E-39 | 2 | 79 | No hit | No description |
PRINTS | PR00404 | 6.3E-27 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.2E-22 | 10 | 56 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.3E-27 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.3E-27 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 12.213 | 87 | 177 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 3.7E-21 | 88 | 171 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MARGKIQMKR IENPVHRQVT FCKRRAGLLK KAKELSVLCD AEIGIFIFSA HGKLYELATK 60 GTMQGLIEKY MKSSCGSQDD QAKEAQLLDT KEEINMLKHE IELLQKGLRY MLGGGAGTMT 120 LDELHIFEKH LEIWIYNIRS AKMEIMFQEI QLLKNKEGIL KAANNYLQEM IDDQTGITNI 180 APMINPYPLT TQNEIFQT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 2e-15 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_B | 2e-15 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_C | 2e-15 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_D | 2e-15 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_A | 2e-15 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_B | 2e-15 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_C | 2e-15 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_D | 2e-15 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
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Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in leaves and spikelets (rice flower). {ECO:0000269|Ref.7}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. | |||||
UniProt | Probable transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM451474 | 1e-96 | AM451474.1 Vitis vinifera contig VV78X101988.23, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002278239.1 | 1e-146 | PREDICTED: agamous-like MADS-box protein AGL12 | ||||
Swissprot | A2YQK9 | 4e-78 | MAD26_ORYSI; MADS-box transcription factor 26 | ||||
Swissprot | Q0J8G8 | 4e-78 | MAD26_ORYSJ; MADS-box transcription factor 26 | ||||
TrEMBL | D7U912 | 1e-144 | D7U912_VITVI; Uncharacterized protein | ||||
STRING | VIT_18s0041g02140.t01 | 1e-145 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71692.1 | 2e-78 | AGAMOUS-like 12 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01025916001 |
Entrez Gene | 100253426 |
Publications ? help Back to Top | |||
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