PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01025739001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family E2F/DP
Protein Properties Length: 350aa    MW: 38248.6 Da    PI: 6.686
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01025739001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP87.31.2e-2797179271
            E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                        ++++Lr++++k   ++ek+e+ g++t+neva+eLv+e                d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg
  GSVIVT01025739001  97 SGRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfadpsnsltspdqqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 179
                        689********...*****999*******************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094041.4E-1321349IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.109.0E-4792184IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013724.2E-3596179IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023193.1E-2598179IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.21E-2199180IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144581.66E-43184287IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440742.88E-43185301No hitNo description
SMARTSM011384.6E-73186347IPR014889Transcription factor DP, C-terminal
PfamPF087815.2E-41187318IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MVTGGSHQED GEKNPATVSK GGATRSWGTT VSGQSVSTSG SVGSPSSRSE AALATPASEN  60
TFLRLNHLDI HGDDAGSQGA ANRKKKRGQR AVGGDKSGRG LRQFSMKVCE KVESKGRTTY  120
NEVADELVAE FADPSNSLTS PDQQQYDEKN IRRRVYDALN VLMAMDIISK DKKEIQWKGL  180
PRTSLNDIEE LKTDRIGLRG RIEKKAAYLQ ELEEQFVGLQ NLIQRNEQLY SSGNAPSGGV  240
ALPFILVQTR PHATVEVEIS EDMQLVHFDF NSTPFELHDD NYVLKAMKFC ERPQGDDVTH  300
DFPADGEGSS MPGMYQSLIP HSSRSSTLGR PPTSPPLPGI LKARVKHEH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B3e-3690184193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.265770.0fruit| inflorescence
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during the whole cell cycle. {ECO:0000269|PubMed:11669580}.
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16920782}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3817570.0FQ381757.1 Vitis vinifera clone SS0ABG85YD15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002282450.10.0PREDICTED: transcription factor-like protein DPB
RefseqXP_010653618.10.0PREDICTED: transcription factor-like protein DPB
SwissprotQ9FNY21e-167DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A1U7YP910.0A0A1U7YP91_NELNU; transcription factor-like protein DPB
STRINGXP_010241817.10.0(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP25111734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-152Transcription factor DP