PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01025691001
Common NameVIT_08s0040g01810
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family ARF
Protein Properties Length: 581aa    MW: 64936.5 Da    PI: 7.5542
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01025691001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.23.1e-23119220199
                        EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                        f k+lt+sd+++ g +++p+ +ae++         ++ +   +  +d +g++W++++iyr++++r++lt+GW+ Fv+ ++L +gD++vF   
  GSVIVT01025691001 119 FAKTLTQSDANNGGGFSVPRYCAETIfprldytADPPVQ--NILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLIAGDSIVFL-- 206
                        89****************************998666666..59999********************************************.. PP

                        SSSEE..EEEEE-S CS
                 B3  86 grsefelvvkvfrk 99 
                        + +++ l+v+++r+
  GSVIVT01025691001 207 RAENGDLCVGIRRA 220
                        4488999****997 PP
2Auxin_resp111.11.1e-36245328183
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                        a++ a ++++Fev+Y+Prast+eF+vk + v++a +++++ GmRfkmafetedss++++ +Gt+++v+ +dpvrWp+S+Wr+L+
  GSVIVT01025691001 245 AVRLAVNGQPFEVIYYPRASTPEFCVKSSLVKSASQIRWCSGMRFKMAFETEDSSRISWfMGTISSVQVADPVRWPDSPWRLLQ 328
                        5678899***************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.8E-36111223IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.41E-29112224IPR015300DNA-binding pseudobarrel domain
CDDcd100171.10E-20118219No hitNo description
PROSITE profilePS5086312.929119221IPR003340B3 DNA binding domain
SMARTSM010198.6E-21119221IPR003340B3 DNA binding domain
PfamPF023623.7E-21119220IPR003340B3 DNA binding domain
PfamPF065075.2E-32245328IPR010525Auxin response factor
PROSITE profilePS5174520.308491574IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009734Biological Processauxin-activated signaling pathway
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 581 aa     Download sequence    Send to blast
MIPFLGSKEK SKEAGKCLNP QLWHACAGGM VQMPPVNSKV FYFPQGHAEH ACASVDFRNY  60
PRIPAYIPCR VSAMKFMADP ESDEVYAKIT LVPLNGSESD YDDDGYGNGT ESQEKPASFA  120
KTLTQSDANN GGGFSVPRYC AETIFPRLDY TADPPVQNIL AKDVHGETWK FRHIYRGTPR  180
RHLLTTGWST FVNHKKLIAG DSIVFLRAEN GDLCVGIRRA KRGIGCSNGS FFGRVKVTAE  240
AVIEAVRLAV NGQPFEVIYY PRASTPEFCV KSSLVKSASQ IRWCSGMRFK MAFETEDSSR  300
ISWFMGTISS VQVADPVRWP DSPWRLLQVT WDEPDLLQNV KRVSPWLVEL VSNMPSIHLT  360
HFSPPRKKLR FPQYPDFPLD AQFSMPTFSS NLVGPSNPFG CLSDNIPAGM QGARHAQYGL  420
SLSDPHHNKF QSGLFPAPFP QLDHPATPPK ASNDYKSDDR KTGFTLFEHS SCEGYQTYKV  480
NHRETEPNLE TGHCKVFMES EDVGRTLDLS LLTSYDELCG KLAKMFTIED SEMRNHVLYR  540
DATGAVKHIG DEPFSDFTKT AKRLTILMDS SSDNVGVYRK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A2e-91834941388Auxin response factor 5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.29410.0flower| fruit| inflorescence| leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00461DAPTransfer from AT4G30080Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4863300.0AM486330.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X249697.12, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002281486.10.0PREDICTED: auxin response factor 18
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLF6HR270.0F6HR27_VITVI; Auxin response factor
STRINGVIT_08s0040g01810.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5261578
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]