PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01025657001
Common NameLOC100248298, VIT_08s0040g02110
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family NAC
Protein Properties Length: 350aa    MW: 40037 Da    PI: 8.5158
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01025657001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.62.1e-52131401128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                        lppGfrFhP+deel+ +yL++k++++++++ ++i+evd+yk++Pw+Lp+k+  +++ewyfF++rd+ky++g r+nra++sgyWkatg+dk++
  GSVIVT01025657001  13 LPPGFRFHPSDEELIIHYLRNKATSSPIPA-SIIAEVDLYKYNPWELPTKALFGQDEWYFFTPRDRKYPNGVRPNRAAASGYWKATGTDKPI 103
                        79****************************.89***************77778999************************************ PP

                NAM  93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        l++ +++ +g+kk Lvfykgr pkg+ktdW+mheyrl
  GSVIVT01025657001 104 LTScGTRSIGVKKALVFYKGRPPKGVKTDWIMHEYRL 140
                        *9988889***************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-638167IPR003441NAC domain
PROSITE profilePS5100560.52113167IPR003441NAC domain
PfamPF023656.4E-2714140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MDTQLSSNIQ LQLPPGFRFH PSDEELIIHY LRNKATSSPI PASIIAEVDL YKYNPWELPT  60
KALFGQDEWY FFTPRDRKYP NGVRPNRAAA SGYWKATGTD KPILTSCGTR SIGVKKALVF  120
YKGRPPKGVK TDWIMHEYRL LDSMFRTLKH KGSMRLDDWV LCRVRQKSSI PRNIWEDRNG  180
PSSEPASYSP AVDKACNMTT NSNVEMIKSY LYNDCPLLPY IFASQDFSAI SFEGRNKGKF  240
YSSVCSENNS DQKNLLVSVS SSNSLFNPQK RKPIEGNQYE GFLPPSKKLN NRDDKDKFLL  300
SVDSTEMNCS RTEESEDNNF TADQWDSITQ YQELNYLAFT ENNHTLSKN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-7111763173Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4884680.0AM488468.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X226626.5, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002275457.10.0PREDICTED: NAC domain-containing protein 67
TrEMBLA0A438IPZ50.0A0A438IPZ5_VITVI; NAC transcription factor 25
TrEMBLF6HR100.0F6HR10_VITVI; Uncharacterized protein
STRINGVIT_08s0040g02110.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.11e-84NAC domain containing protein 25