PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01025657001 | ||||||||
Common Name | LOC100248298, VIT_08s0040g02110 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | NAC | ||||||||
Protein Properties | Length: 350aa MW: 40037 Da PI: 8.5158 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 168.6 | 2.1e-52 | 13 | 140 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrFhP+deel+ +yL++k++++++++ ++i+evd+yk++Pw+Lp+k+ +++ewyfF++rd+ky++g r+nra++sgyWkatg+dk++ GSVIVT01025657001 13 LPPGFRFHPSDEELIIHYLRNKATSSPIPA-SIIAEVDLYKYNPWELPTKALFGQDEWYFFTPRDRKYPNGVRPNRAAASGYWKATGTDKPI 103 79****************************.89***************77778999************************************ PP NAM 93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 l++ +++ +g+kk Lvfykgr pkg+ktdW+mheyrl GSVIVT01025657001 104 LTScGTRSIGVKKALVFYKGRPPKGVKTDWIMHEYRL 140 *9988889***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.22E-63 | 8 | 167 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.521 | 13 | 167 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.4E-27 | 14 | 140 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 350 aa Download sequence Send to blast |
MDTQLSSNIQ LQLPPGFRFH PSDEELIIHY LRNKATSSPI PASIIAEVDL YKYNPWELPT 60 KALFGQDEWY FFTPRDRKYP NGVRPNRAAA SGYWKATGTD KPILTSCGTR SIGVKKALVF 120 YKGRPPKGVK TDWIMHEYRL LDSMFRTLKH KGSMRLDDWV LCRVRQKSSI PRNIWEDRNG 180 PSSEPASYSP AVDKACNMTT NSNVEMIKSY LYNDCPLLPY IFASQDFSAI SFEGRNKGKF 240 YSSVCSENNS DQKNLLVSVS SSNSLFNPQK RKPIEGNQYE GFLPPSKKLN NRDDKDKFLL 300 SVDSTEMNCS RTEESEDNNF TADQWDSITQ YQELNYLAFT ENNHTLSKN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-71 | 1 | 176 | 3 | 173 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM488468 | 0.0 | AM488468.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X226626.5, clone ENTAV 115. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002275457.1 | 0.0 | PREDICTED: NAC domain-containing protein 67 | ||||
TrEMBL | A0A438IPZ5 | 0.0 | A0A438IPZ5_VITVI; NAC transcription factor 25 | ||||
TrEMBL | F6HR10 | 0.0 | F6HR10_VITVI; Uncharacterized protein | ||||
STRING | VIT_08s0040g02110.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61110.1 | 1e-84 | NAC domain containing protein 25 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01025657001 |
Entrez Gene | 100248298 |