PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01025502001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | G2-like | ||||||||
Protein Properties | Length: 164aa MW: 18554.2 Da PI: 10.7017 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 103.1 | 1.8e-32 | 21 | 75 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+WtpeLHerF+eav+qLGG+ kAtPkti++ m+++g+tl+h+kSHLQkYR+ GSVIVT01025502001 21 KPRLKWTPELHERFMEAVNQLGGAYKATPKTIMKQMGIQGITLNHIKSHLQKYRM 75 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.176 | 18 | 78 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.2E-29 | 19 | 76 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.08E-17 | 20 | 75 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 6.7E-24 | 21 | 75 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 9.6E-12 | 23 | 74 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 164 aa Download sequence Send to blast |
MNQNRRHNQG NTGPVLLADS KPRLKWTPEL HERFMEAVNQ LGGAYKATPK TIMKQMGIQG 60 ITLNHIKSHL QKYRMSEHFL GQASTENTRN DGIAAVTGDR RFEANGESIY KIPLGSHTNK 120 SLQKSTALQM LIEVPRRPHE QLEVLHNFNS RFLTSLIFTI SHI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 6e-21 | 21 | 78 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 6e-21 | 21 | 78 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 5e-21 | 21 | 78 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 5e-21 | 21 | 78 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 5e-21 | 21 | 78 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 5e-21 | 21 | 78 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 6e-21 | 21 | 78 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 6e-21 | 21 | 78 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 6e-21 | 21 | 78 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 6e-21 | 21 | 78 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 6e-21 | 21 | 78 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 6e-21 | 21 | 78 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in phloem and/or cambium. {ECO:0000269|PubMed:15923329}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:15592750}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269|PubMed:15592750}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM461935 | 3e-69 | AM461935.2 Vitis vinifera contig VV78X257019.3, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010651406.1 | 5e-96 | PREDICTED: myb-related protein 2 isoform X3 | ||||
Swissprot | Q9SQQ9 | 1e-40 | PHL9_ARATH; Myb-related protein 2 | ||||
TrEMBL | A0A438EM75 | 1e-90 | A0A438EM75_VITVI; Myb-related protein 2 | ||||
TrEMBL | A0A438JVP8 | 9e-91 | A0A438JVP8_VITVI; Myb-related protein 2 | ||||
STRING | VIT_06s0004g00150.t01 | 5e-52 | (Vitis vinifera) | ||||
STRING | XP_010257717.1 | 2e-49 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP78 | 17 | 262 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04030.1 | 2e-43 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01025502001 |
Publications ? help Back to Top | |||
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