PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01025461001
Common NameLOC100245016, VIT_06s0004g00490
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family ERF
Protein Properties Length: 271aa    MW: 30029.7 Da    PI: 8.1432
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01025461001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.51.5e-173584255
                AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                       ++ GVr+++ +g+WvAeI+  +   ++ r +lg+f taeeAa+a+++a+  l+g
  GSVIVT01025461001 35 KFVGVRQRP-SGKWVAEIKNTT---QKIRMWLGTFNTAEEAARAYDEAACLLRG 84
                       799******.7******99932...36**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.01E-193593IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.0E-283593IPR001471AP2/ERF domain
PfamPF008475.0E-133584IPR001471AP2/ERF domain
SMARTSM003805.2E-363598IPR001471AP2/ERF domain
PROSITE profilePS5103219.5853592IPR001471AP2/ERF domain
CDDcd000183.68E-323594No hitNo description
PRINTSPR003677.1E-83647IPR001471AP2/ERF domain
PRINTSPR003677.1E-85874IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0035865Biological Processcellular response to potassium ion
GO:0048528Biological Processpost-embryonic root development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MELYFQNHPN GVSSPCKQTK VRERTATNKC SKSGKFVGVR QRPSGKWVAE IKNTTQKIRM  60
WLGTFNTAEE AARAYDEAAC LLRGSNTRTN FATHAPTNSP LSLKIRNLLH RKKSLKQNHP  120
PPPAALTTIP TEMSTGASST SGNSHSINAS HASNVVKQDI QMFDDAYRPD LSNCIGELRL  180
GSSQFDPSWV FPAGSDWLQS TQDGFEFPKH AELLSRATDL DMTEFGLMKV ERHLSASFNA  240
MNGVNEYMEN VYDSNDAFWD PSLCQLFCTG *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1431911071Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the symbiotic nodule signaling pathway in response to rhizobial stimulation. Functions as a transcriptional regulator required for root infection by symbiotic rhizobia, infection thread (IT) formation, and nodule development. May coordinate these processes (PubMed:28503742, PubMed:28028038, PubMed:28068194). Functions downstream of the CCAMK-CYCLOPS complex (PubMed:28503742, PubMed:28028038). Probably not involved in arbuscular mycorrhizal (AM) symbiosis (PubMed:28068194). {ECO:0000269|PubMed:28028038, ECO:0000269|PubMed:28068194, ECO:0000269|PubMed:28503742}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00521DAPTransfer from AT5G19790Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in nodules 7 days after rhizobial inoculation. {ECO:0000269|PubMed:28028038, ECO:0000269|PubMed:28503742}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4622490.0AM462249.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X175150.2, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002283627.10.0PREDICTED: ethylene-responsive transcription factor RAP2-11
SwissprotA0A1X9PY885e-72ERN1_LOTJA; Ethylene-responsive transcription factor ERN1
TrEMBLD7SLK50.0D7SLK5_VITVI; Uncharacterized protein
STRINGVIT_06s0004g00490.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.15e-48related to AP2 11
Publications ? help Back to Top
  1. Yano K, et al.
    Function and evolution of a Lotus japonicus AP2/ERF family transcription factor that is required for development of infection threads.
    DNA Res., 2017. 24(2): p. 193-203
    [PMID:28028038]
  2. Kawaharada Y,James EK,Kelly S,Sandal N,Stougaard J
    The Ethylene Responsive Factor Required for Nodulation 1 (ERN1) Transcription Factor Is Required for Infection-Thread Formation in Lotus japonicus.
    Mol. Plant Microbe Interact., 2017. 30(3): p. 194-204
    [PMID:28068194]
  3. Cerri MR, et al.
    The ERN1 transcription factor gene is a target of the CCaMK/CYCLOPS complex and controls rhizobial infection in Lotus japonicus.
    New Phytol., 2017. 215(1): p. 323-337
    [PMID:28503742]