PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01025452001
Common NameVIT_06s0004g00570
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MYB
Protein Properties Length: 291aa    MW: 31822.4 Da    PI: 8.9822
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01025452001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.21.6e-172774148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       rg+WT+eEde l++++k+ G g+W+t +++ g+ R++k+c++rw +yl
  GSVIVT01025452001 27 RGPWTPEEDEVLANYIKKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYL 74
                       89******************************99************97 PP
2Myb_DNA-binding46.86.8e-1585125648
                        HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
  GSVIVT01025452001  85 PDEEDLILRLHRLLGNR-WALIAGRIP-GRTDNEIKNYWNTHL 125
                        89***************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.2E-221876IPR009057Homeodomain-like
PROSITE profilePS5129416.3222274IPR017930Myb domain
SuperFamilySSF466895.62E-2924121IPR009057Homeodomain-like
SMARTSM007178.4E-132676IPR001005SANT/Myb domain
PfamPF002493.1E-152774IPR001005SANT/Myb domain
CDDcd001678.76E-112974No hitNo description
PROSITE profilePS5129424.34975129IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.3E-2477130IPR009057Homeodomain-like
SMARTSM007172.4E-1379127IPR001005SANT/Myb domain
CDDcd001671.80E-1185125No hitNo description
PfamPF002498.2E-1485125IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010090Biological Processtrichome morphogenesis
GO:0010468Biological Processregulation of gene expression
GO:0048354Biological Processmucilage biosynthetic process involved in seed coat development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MRNASSASAP PSSSSKTPCC IKVGLKRGPW TPEEDEVLAN YIKKEGEGRW RTLPKRAGLL  60
RCGKSCRLRW MNYLRPSVKR GQIAPDEEDL ILRLHRLLGN RWALIAGRIP GRTDNEIKNY  120
WNTHLSKKLI SQGIDPRTHK PLNPNSSVDV KASSSKAKAE AGNFKSDNQY QIGAAGNDGS  180
ANIQNSDGSG TGLRSSNNEE DDDLNCGTDD VFSSFLNSLI NEDLFPGQHH LQQQHHGGLI  240
APGSDALIST SSVQSFGFGT SWEAAAMTST SAFSQIDHSK RFNDQPDKRF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-26251295108B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.33700.0fruit| inflorescence
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Siliques. {ECO:0000269|PubMed:9839469}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ3086220.0JQ308622.1 Vitis bellula putative MYB transcription factor (MYB5a) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001267854.10.0MYB5b
SwissprotQ388503e-86MYB5_ARATH; Transcription repressor MYB5
TrEMBLF6GUM70.0F6GUM7_VITVI; Uncharacterized protein
STRINGVIT_06s0004g00570.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.12e-85myb domain protein 5
Publications ? help Back to Top
  1. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]