PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01025360001
Common NameLOC100263958, VIT_06s0004g01290
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family C3H
Protein Properties Length: 245aa    MW: 25706.2 Da    PI: 9.8597
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01025360001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.19.7e-11210234126
                        --S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                        +kt+lC +f + G C +G+rC+FaHg
  GSVIVT01025360001 210 FKTKLCENFTK-GSCTFGERCHFAHG 234
                        69*********.*************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.73764IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.0423765IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.36E-63863IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.6E-73962IPR000571Zinc finger, CCCH-type
SuperFamilySSF547913.07E-15111187IPR004088K Homology domain, type 1
SMARTSM003223.9E-12116186IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.103.9E-16117185IPR004088K Homology domain, type 1
PROSITE profilePS5008414.194117181IPR004088K Homology domain, type 1
PfamPF000131.6E-11119183IPR004088K Homology domain, type 1
CDDcd001051.13E-13121181No hitNo description
Gene3DG3DSA:4.10.1000.101.1E-16208241IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.76E-9209240IPR000571Zinc finger, CCCH-type
SMARTSM003565.3E-7209235IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.464209236IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-8210234IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MELGGARKRG RQEGTLNGNG GFKKSKQEME SFSSGIGSKS KPCTKFFSTS GCPFGEGCHF  60
LHYVPGGIKA VSQMWELGKP TLPSHHEDHR GMGSGRLAGR LEPPPPGLAA AASFGASATA  120
KISVDASLAG AIIGKSGVNS KQICRLTGAK LSIKDHDSDP NLRNIELEGT FDQIKQASAM  180
VRELIVNISS ASGPPMRNPA MQASAAANNF KTKLCENFTK GSCTFGERCH FAHGADELRK  240
PAGM*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.126290.0bud| flower| fruit| inflorescence
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4691690.0AM469169.2 Vitis vinifera contig VV78X242078.3, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002285629.11e-145PREDICTED: zinc finger CCCH domain-containing protein 14
SwissprotQ9C7C31e-94C3H36_ARATH; Zinc finger CCCH domain-containing protein 36
TrEMBLF6GUE51e-144F6GUE5_VITVI; Uncharacterized protein
STRINGVIT_06s0004g01290.t011e-145(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP10261756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.17e-87C3H family protein
Publications ? help Back to Top
  1. Yan Z,Jia J,Yan X,Shi H,Han Y
    Arabidopsis KHZ1 and KHZ2, two novel non-tandem CCCH zinc-finger and K-homolog domain proteins, have redundant roles in the regulation of flowering and senescence.
    Plant Mol. Biol., 2017. 95(6): p. 549-565
    [PMID:29076025]