PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01025360001 | ||||||||
Common Name | LOC100263958, VIT_06s0004g01290 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | C3H | ||||||||
Protein Properties | Length: 245aa MW: 25706.2 Da PI: 9.8597 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 33.1 | 9.7e-11 | 210 | 234 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC +f + G C +G+rC+FaHg GSVIVT01025360001 210 FKTKLCENFTK-GSCTFGERCHFAHG 234 69*********.*************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 1.7 | 37 | 64 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.042 | 37 | 65 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.36E-6 | 38 | 63 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.6E-7 | 39 | 62 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF54791 | 3.07E-15 | 111 | 187 | IPR004088 | K Homology domain, type 1 |
SMART | SM00322 | 3.9E-12 | 116 | 186 | IPR004087 | K Homology domain |
Gene3D | G3DSA:3.30.1370.10 | 3.9E-16 | 117 | 185 | IPR004088 | K Homology domain, type 1 |
PROSITE profile | PS50084 | 14.194 | 117 | 181 | IPR004088 | K Homology domain, type 1 |
Pfam | PF00013 | 1.6E-11 | 119 | 183 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 1.13E-13 | 121 | 181 | No hit | No description |
Gene3D | G3DSA:4.10.1000.10 | 1.1E-16 | 208 | 241 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.76E-9 | 209 | 240 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.3E-7 | 209 | 235 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.464 | 209 | 236 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.2E-8 | 210 | 234 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MELGGARKRG RQEGTLNGNG GFKKSKQEME SFSSGIGSKS KPCTKFFSTS GCPFGEGCHF 60 LHYVPGGIKA VSQMWELGKP TLPSHHEDHR GMGSGRLAGR LEPPPPGLAA AASFGASATA 120 KISVDASLAG AIIGKSGVNS KQICRLTGAK LSIKDHDSDP NLRNIELEGT FDQIKQASAM 180 VRELIVNISS ASGPPMRNPA MQASAAANNF KTKLCENFTK GSCTFGERCH FAHGADELRK 240 PAGM* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.12629 | 0.0 | bud| flower| fruit| inflorescence |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM469169 | 0.0 | AM469169.2 Vitis vinifera contig VV78X242078.3, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002285629.1 | 1e-145 | PREDICTED: zinc finger CCCH domain-containing protein 14 | ||||
Swissprot | Q9C7C3 | 1e-94 | C3H36_ARATH; Zinc finger CCCH domain-containing protein 36 | ||||
TrEMBL | F6GUE5 | 1e-144 | F6GUE5_VITVI; Uncharacterized protein | ||||
STRING | VIT_06s0004g01290.t01 | 1e-145 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP1026 | 17 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12130.1 | 7e-87 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01025360001 |
Entrez Gene | 100263958 |
Publications ? help Back to Top | |||
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