PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01025244001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family NAC
Protein Properties Length: 365aa    MW: 41280.7 Da    PI: 4.9285
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01025244001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM143.41.3e-44381641128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                        lppG+rF+Ptd e++v+yL+kk+++++l+  + i ev++y ++P +L ++++  +++ew++F++r++ky++g+r+nr++ +gyWkatg dke
  GSVIVT01025244001  38 LPPGYRFNPTDAEIIVFYLRKKIDHQSLPP-NKIIEVNLYGYDPDELAARYEPsGNDEWFYFTPRERKYRNGQRPNRSIGEGYWKATGADKE 128
                        79*************************999.6799************9655442666*********************************** PP

                NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                        ++  ++++vg +k Lvfy+g+a++g+kt+W+mhe+++
  GSVIVT01025244001 129 IKF-EDRTVGYRKALVFYRGSAQNGVKTNWIMHEFTV 164
                        **9.9999***************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.81E-5432192IPR003441NAC domain
PROSITE profilePS5100549.95238192IPR003441NAC domain
PfamPF023651.4E-2339163IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MNLSELSEDA SLQTVEGKAE EVQNSSSKGG ELFDLNSLPP GYRFNPTDAE IIVFYLRKKI  60
DHQSLPPNKI IEVNLYGYDP DELAARYEPS GNDEWFYFTP RERKYRNGQR PNRSIGEGYW  120
KATGADKEIK FEDRTVGYRK ALVFYRGSAQ NGVKTNWIMH EFTVAKPPGP PRRSGVNDMR  180
LDDCVLCRVY RTDERIYKRS RHASRLDESG PSGSKIPRLD LNPNPNGVNN PYEEQYYYNS  240
IQMPLQAQQQ QPRTEIFQAP QEPDHFALQS NTQYPILDPS VLMPLPTPHQ SIHYIGNEFG  300
GQGLDNFDIM NGAIGNSSFD AGNSNDFGNV PGFDSTDYVY PMIDYGNDAA PMPSNMNGNY  360
GRQL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-473719014166Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4666790.0AM466679.2 Vitis vinifera contig VV78X135841.6, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010651461.10.0PREDICTED: NAC transcription factor 25-like
TrEMBLA0A438HLV70.0A0A438HLV7_VITVI; NAC transcription factor 47
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.25e-50NAC domain containing protein 47