PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01025220001
Common NameVIT_06s0004g02580
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family TALE
Protein Properties Length: 747aa    MW: 81857.2 Da    PI: 7.5229
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01025220001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.62.3e-096476841954
                        HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
           Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                        Fe   ++yp+ +++  LA+++gL+ +qV++WF N R +
  GSVIVT01025220001 647 FEHflHPYPTDTDKHMLATQTGLSRNQVSNWFINARVR 684
                        564459******************************87 PP
2BELL111.83.8e-36503571472
               BELL   4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                        + q+kkakLl ++eeV++rYkqy++q+q+v+ssFe+vagl +a+pY++lAlk++SrhFr Lk+ai++q+
  GSVIVT01025220001 503 DYQQKKAKLLFMQEEVCRRYKQYHQQMQMVVSSFETVAGLSAATPYIALALKTVSRHFRFLKNAISDQL 571
                        789***************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.5E-47407569IPR006563POX domain
PfamPF075268.5E-44412568IPR006563POX domain
PROSITE profilePS5007111.855625688IPR001356Homeobox domain
CDDcd000861.29E-11628689No hitNo description
SMARTSM003891.8E-8628692IPR001356Homeobox domain
SuperFamilySSF466898.55E-17630694IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-27631692IPR009057Homeodomain-like
PfamPF059203.4E-18645684IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010223Biological Processsecondary shoot formation
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010229Biological Processinflorescence development
GO:0048645Biological Processorgan formation
GO:0080006Biological Processinternode patterning
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 747 aa     Download sequence    Send to blast
MRNFRPESHV AQQSRRDKLR VQHQSSTPAH HLEEFPNSLE QLSVHPELNP DLIQVRNVRN  60
GNVLYDPIVL SSEMLNFSSN SHVFLGSKDA MVGQDSNAVS QDASFPNLSH PISSKAAGDP  120
QNCDNWKGLG TQQSCDWIVN YANGTVASES NQNPMYVGEV LSASSMKVNN ISASSLDLKP  180
NYSGYQDVQS SITNPSSEIS SQDSQKHYGE IHFNSPQLYR NTLQEVVTSA AVGTQGLEMA  240
SFAHQNIRDT GRDSWEDGGN ELVLLPNFGN QSSALRLDSS VAWMTRPVEG CHQWSGGDLG  300
VLANKSLGDL STIASDSNAQ GLSLSLSSHP SSKIQVAQFG ERYESKDLRS GTAAFSCPQD  360
LKVMSSGYLC SDSKPPVSGK GYGNSLHDIV GTSTYTHRSA GPLGPFTGYA TILKSSKFLK  420
PAQQVLDEFC KAASPKLVKT CEVTRRTSGD VSVSVPDAVN TSDTEVGAAK GGNSAVSSST  480
FYDSNEISEG GVKSSSCESY RPDYQQKKAK LLFMQEEVCR RYKQYHQQMQ MVVSSFETVA  540
GLSAATPYIA LALKTVSRHF RFLKNAISDQ LRHIRKALGE DLSSPSTGAC TSAGDASSPR  600
LKFMNQSFPK HKPGGANLGF LEPQQHVWRP QRGLPERAVA ILRAWLFEHF LHPYPTDTDK  660
HMLATQTGLS RNQVSNWFIN ARVRVWKPMV EEVHMLETKG LAERDQNSGK KDWKSIGEGM  720
NWVLSSGIKR SDQEWSAKFL EAWTGH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A6e-16634692563Homeobox protein Meis2
4xrm_B6e-16634692563Homeobox protein Meis2
4xrs_A5e-16634691158Homeobox protein Meis1
4xrs_B5e-16634691158Homeobox protein Meis1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.57930.0fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4383300.0AM438330.2 Vitis vinifera contig VV78X244179.3, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002282519.20.0PREDICTED: BEL1-like homeodomain protein 9
RefseqXP_010651201.10.0PREDICTED: BEL1-like homeodomain protein 9
RefseqXP_010651202.10.0PREDICTED: BEL1-like homeodomain protein 9
RefseqXP_010651204.10.0PREDICTED: BEL1-like homeodomain protein 9
TrEMBLF6GU210.0F6GU21_VITVI; Uncharacterized protein
STRINGVIT_06s0004g02580.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP13316172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27990.12e-88BEL1-like homeodomain 8