PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01025165001
Common NameVIT_06s0004g03080
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family NAC
Protein Properties Length: 377aa    MW: 42958.1 Da    PI: 8.8622
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01025165001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM164.44.1e-51121382128
                NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                        ppGfrFhP+deel+v+yL+kkv++++l++ +vi+e+d+yk++Pw+Lpkk+  +e+ewyfFs+rd+ky++g r+nra++sg+Wkatg+dk++l
  GSVIVT01025165001  12 PPGFRFHPSDEELIVHYLQKKVTSHPLPA-SVIAEIDLYKYNPWELPKKALFGEEEWYFFSPRDRKYPNGVRPNRAAASGFWKATGTDKPIL 102
                        9****************************.99***************8888899************************************** PP

                NAM  94 sk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        ++ +++ +g+kk Lvfy gr p+g+kt+W+m+eyrl
  GSVIVT01025165001 103 TScGSKSIGVKKALVFYIGRPPRGVKTEWIMNEYRL 138
                        9988899***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.41E-628166IPR003441NAC domain
PROSITE profilePS5100559.49511166IPR003441NAC domain
PfamPF023655.0E-2612138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MEREPNSSFQ FPPGFRFHPS DEELIVHYLQ KKVTSHPLPA SVIAEIDLYK YNPWELPKKA  60
LFGEEEWYFF SPRDRKYPNG VRPNRAAASG FWKATGTDKP ILTSCGSKSI GVKKALVFYI  120
GRPPRGVKTE WIMNEYRLLN TMNRPGSRSK GSMRLDDWVL CRVRHKGNMP KNTCEGQDSP  180
STELISYLPK IEEQQPMHTK HNDMDTGYLY NHCELIASIL AGHPLPHNET ISNVTFKGSN  240
NSNSHGSVHE DGSDKVNLPI TVSSFDSFFN PLNGNSTEKH RYENPPPSQK MLTSNNEDES  300
LSPHKTSTNN HMNFHSQSQS QVSIINSNPS NPICLQKPNH VLHRQISTVM NWPFTEGNEK  360
NRSWGLYRRE NEPKHT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-7021686170Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family associated with male fertility. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4519950.0AM451995.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X227225.4, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010651145.20.0PREDICTED: NAC domain-containing protein 72-like
SwissprotA2YMR01e-80NAC10_ORYSI; NAC transcription factor ONAC010
TrEMBLA0A438DTI40.0A0A438DTI4_VITVI; NAC transcription factor ONAC010
TrEMBLF6GTZ40.0F6GTZ4_VITVI; Uncharacterized protein
STRINGVIT_06s0004g03080.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.11e-80NAC domain containing protein 25