PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01025128001 | ||||||||
Common Name | LOC100251969, VIT_06s0004g03330 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | LBD | ||||||||
Protein Properties | Length: 203aa MW: 22028.9 Da PI: 4.5045 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 136.9 | 7.1e-43 | 40 | 139 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +CaaCk+lrr+Ca++Cvlapyfp ++p+kf +h++FGasn++k+l++lpe +r da+ss+vyeA+ar+rdPvyG++g i +lq+ql++l+a GSVIVT01025128001 40 PCAACKILRRRCADKCVLAPYFPPTDPAKFTTAHRVFGASNIIKFLQELPEFQRADAVSSMVYEAQARIRDPVYGCAGAICQLQKQLDELQA 131 7******************************************************************************************* PP DUF260 93 elallkee 100 +la++++e GSVIVT01025128001 132 QLAKTQAE 139 ****9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.219 | 39 | 140 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 7.9E-43 | 40 | 137 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MECSDSTAAT NNSSCSSSSP RSLSPSSSSS PPPPNVVLSP CAACKILRRR CADKCVLAPY 60 FPPTDPAKFT TAHRVFGASN IIKFLQELPE FQRADAVSSM VYEAQARIRD PVYGCAGAIC 120 QLQKQLDELQ AQLAKTQAEL VNMQCQQANL VTMICMEMEM SQSPQPSSEE SLDSLISPQS 180 YQSNSFFLDD SNIGATWEPL WT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-43 | 39 | 147 | 10 | 118 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-43 | 39 | 147 | 10 | 118 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM425177 | 0.0 | AM425177.2 Vitis vinifera contig VV78X213648.5, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002282070.1 | 1e-147 | PREDICTED: LOB domain-containing protein 1 | ||||
Swissprot | Q9SK08 | 2e-73 | LBD11_ARATH; LOB domain-containing protein 11 | ||||
TrEMBL | D7SKT6 | 1e-145 | D7SKT6_VITVI; Uncharacterized protein | ||||
STRING | VIT_06s0004g03330.t01 | 1e-146 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP60 | 16 | 318 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 7e-69 | LOB domain-containing protein 1 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01025128001 |
Entrez Gene | 100251969 |