PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01025126001 | ||||||||
Common Name | LOC104879565, VIT_06s0004g03350 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | LBD | ||||||||
Protein Properties | Length: 205aa MW: 21945 Da PI: 5.7172 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 136.7 | 8.1e-43 | 40 | 139 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +CaaCk+lrr+Ca++Cvlapyfp ++p+kf +h++FGasn++k+l++lpe +r da+ss+vyeA+ar+rdPvyG++g i +lq+q+++l+a GSVIVT01025126001 40 PCAACKILRRRCAEKCVLAPYFPPTDPAKFTTAHRVFGASNIIKFLQELPEYQRADAVSSMVYEAQARIRDPVYGCTGAICQLQKQVSELQA 131 7******************************************************************************************* PP DUF260 93 elallkee 100 +la++++e GSVIVT01025126001 132 QLAKAQAE 139 ****9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.351 | 39 | 140 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.6E-43 | 40 | 137 | IPR004883 | Lateral organ boundaries, LOB |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0025242 | anatomy | infructescence axis | ||||
PO:0007017 | developmental stage | sporophyte senescent stage | ||||
PO:0007089 | developmental stage | stem elongation stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MACSDPTSAP NPTTTSPSSP HSLSPPSSST PPPPTVVLSP CAACKILRRR CAEKCVLAPY 60 FPPTDPAKFT TAHRVFGASN IIKFLQELPE YQRADAVSSM VYEAQARIRD PVYGCTGAIC 120 QLQKQVSELQ AQLAKAQAEL VNMQCQQANL IAIICMEMSG SPQPSSFQQS LDSFISPPSY 180 QSGSCFLDDN ITGAAWEPLW TSSL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-44 | 39 | 151 | 10 | 122 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-44 | 39 | 151 | 10 | 122 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM448162 | 0.0 | AM448162.1 Vitis vinifera contig VV78X232060.8, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010651120.1 | 1e-148 | PREDICTED: LOB domain-containing protein 1 | ||||
Swissprot | Q9SK08 | 7e-74 | LBD11_ARATH; LOB domain-containing protein 11 | ||||
TrEMBL | A0A438KNS2 | 1e-146 | A0A438KNS2_VITVI; LOB domain-containing protein 11 | ||||
TrEMBL | D7SKT4 | 1e-146 | D7SKT4_VITVI; Uncharacterized protein | ||||
STRING | VIT_06s0004g03350.t01 | 1e-147 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP60 | 16 | 318 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 2e-60 | LOB domain-containing protein 1 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01025126001 |
Entrez Gene | 104879565 |