PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01024933001 | ||||||||
Common Name | LOC100257123, VIT_06s0004g04970 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | GRAS | ||||||||
Protein Properties | Length: 501aa MW: 57256.8 Da PI: 8.457 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 197 | 1.1e-60 | 146 | 341 | 2 | 199 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 lL++cA+av++ ++++a+ +L+ +++++sp g+ qRla++f++ L+arla+++ ++y al++++ts ++++++a++l++ ++P+ ++ GSVIVT01024933001 146 NALLIQCAQAVAAYNQRAANDILKLIRQHSSPFGNGSQRLAHFFANSLEARLAGTGLQMYTALATKRTS---VADVIKAYQLYVSACPFKRM 234 579************************************************************999999...******************** PP GRAS 94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlva 183 s+ aN+ I + +eg++r+HiiDf++ +G+QWp+L+q L+ Rp+gpp+lRiTg++ p++g +e++eetg+rLa+++++++vpfe+++ +a GSVIVT01024933001 235 SNRYANRVIAKLAEGATRLHIIDFGVLYGFQWPCLIQFLSLRPGGPPKLRITGIDFPQPGfrPAERVEETGRRLANYCKRFKVPFEYKA-IA 325 ***********************************************************9*****************************.7* PP GRAS 184 krledleleeLrvkpg 199 +r+e++++e+L+++++ GSVIVT01024933001 326 QRWETIKVEDLEIDRD 341 ************9986 PP | |||||||
2 | GRAS | 134.7 | 9.7e-42 | 345 | 495 | 224 | 374 |
GRAS 224 rdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekW 315 +d+vL+l+++++P+++++ + + n++ F++rf eal ++ alfd+l+a++pre+e r++ Ere+ g++i+n++aceg+er+er +++W GSVIVT01024933001 345 KDAVLELIRRINPDIFIHGVLNGNFNTPFFFTRFREALFHFDALFDMLDASVPREDEGRMMFEREIYGKDIMNIIACEGSERIERPDIYKQW 436 479***************************************************************************************** PP GRAS 316 rerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++r e+aG++++pl++++ ++++ ++++ + + + ve + g+++ gWk+r ++++S+W+ GSVIVT01024933001 437 QARNERAGLRQLPLEQEILMKVRNIVKMDYHKDFVVEVDGGWMLHGWKGRVIYAISCWK 495 ******************************888*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 54.29 | 119 | 475 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.9E-58 | 146 | 341 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.4E-39 | 345 | 495 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009410 | Biological Process | response to xenobiotic stimulus | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 501 aa Download sequence Send to blast |
MDSIPRKFSG SKNGQKLYHE SVSINSDHNV VERFMDPPFL PTKSHPYNSA TVSGARLEED 60 SAEDCELSIA MLKYMGEILM EDELEDKNCM FQDCVALLAA EKSFYDLGQL EASRKKLHQN 120 EQSKGSNGKA GRVKKKHNKG ELVDLNALLI QCAQAVAAYN QRAANDILKL IRQHSSPFGN 180 GSQRLAHFFA NSLEARLAGT GLQMYTALAT KRTSVADVIK AYQLYVSACP FKRMSNRYAN 240 RVIAKLAEGA TRLHIIDFGV LYGFQWPCLI QFLSLRPGGP PKLRITGIDF PQPGFRPAER 300 VEETGRRLAN YCKRFKVPFE YKAIAQRWET IKVEDLEIDR DGCLKDAVLE LIRRINPDIF 360 IHGVLNGNFN TPFFFTRFRE ALFHFDALFD MLDASVPRED EGRMMFEREI YGKDIMNIIA 420 CEGSERIERP DIYKQWQARN ERAGLRQLPL EQEILMKVRN IVKMDYHKDF VVEVDGGWML 480 HGWKGRVIYA ISCWKPCHHL * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 4e-51 | 128 | 496 | 1 | 379 | Protein SCARECROW |
5b3h_D | 4e-51 | 128 | 496 | 1 | 379 | Protein SCARECROW |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, shoots, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM442805 | 0.0 | AM442805.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X005019.10, clone ENTAV 115. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019075956.1 | 0.0 | PREDICTED: scarecrow-like protein 33 | ||||
Swissprot | Q9XE58 | 1e-160 | SCL14_ARATH; Scarecrow-like protein 14 | ||||
TrEMBL | F6GV00 | 0.0 | F6GV00_VITVI; Uncharacterized protein | ||||
STRING | VIT_06s0004g04970.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP266 | 15 | 129 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 1e-145 | SCARECROW-like 14 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01024933001 |
Entrez Gene | 100257123 |
Publications ? help Back to Top | |||
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