PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01024932001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family GRAS
Protein Properties Length: 713aa    MW: 79260.6 Da    PI: 4.5282
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01024932001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS43.55.2e-14278341164
               GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal 64 
                        l+ lL++cA+a++ ++l+ a+ lL+ +++++sp gd +qRla++f++ L+arl++++ e++kal
  GSVIVT01024932001 278 LRALLTQCAQALAGSNLRSANDLLKMIRQHSSPCGDGVQRLAHFFANSLEARLSGTGLEMSKAL 341
                        5789***************************************************999998876 PP
2GRAS1594e-49342517196371
               GRAS 196 vkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEr 287
                        ++++E+++Vn+ ++l++llde+v  +s+rd+vLkl+++++P v+++   +   n++ F++rf e+l +y +lfd++ea++pre++er+  Er
  GSVIVT01024932001 342 IEKDEVVVVNCLYRLKNLLDETVVANSPRDAVLKLIREINPAVFIHGVVNGTFNAPFFVTRFRESLFHYDTLFDMFEATVPREDQERMLFER 433
                        6789**************************************************************************************** PP

               GRAS 288 ellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvS 371
                        e++g +i+n++aceg+er+er et+++W+ r  +aG++++pl++++++++++ ++  + + + v+e+ g++++gWk+r ++++S
  GSVIVT01024932001 434 EIFGMDIMNIIACEGSERFERPETYKQWQIRNVRAGLRQLPLDQEIVTNVRSTVKLDYHKDFVVDEDGGWMLQGWKGRIIYAIS 517
                        *********************************************************9888*********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035141.8E-11278341IPR005202Transcription factor GRAS
PROSITE profilePS5098522.804321500IPR005202Transcription factor GRAS
PfamPF035141.4E-46342517IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 713 aa     Download sequence    Send to blast
MDTLLGEFSG SMPEFKFDHD SVSVSSYSDQ NLVERSNKLS QGTMDPPFLP TNHQPCNSAT  60
SGATPEGPPT EEGDFSVAMY KYIGDILMEE DLEDKNCMLQ DSVALLAAEK SFYDVLGEPF  120
LPQPNSPQSI GRNIESPDDN PVTSCSSSSS NSDATANSFV ESDWAGQFEA SYLQTPLVNQ  180
VWQSNTEKGG IRGKKKQQRG DGYDSEERST KQSALYAEEC EPSEVFDSAL LCEDLNVSGI  240
CIVEEEARKK LQKNGESKAN GKAGRRKKQG NKGEVVDLRA LLTQCAQALA GSNLRSANDL  300
LKMIRQHSSP CGDGVQRLAH FFANSLEARL SGTGLEMSKA LIEKDEVVVV NCLYRLKNLL  360
DETVVANSPR DAVLKLIREI NPAVFIHGVV NGTFNAPFFV TRFRESLFHY DTLFDMFEAT  420
VPREDQERML FEREIFGMDI MNIIACEGSE RFERPETYKQ WQIRNVRAGL RQLPLDQEIV  480
TNVRSTVKLD YHKDFVVDED GGWMLQGWKG RIIYAISLSY VEAPQCISSH TVFLEIPFYT  540
VLVLRSAGDF LLWSVNSSAD FSLSSVCTFN VLSIISATLN LYTNSIFSFS FPQFSQKPNL  600
GCRPRLEEAS PEEGGFVNAS LKYINRMLME DNIEEKTNTL HDSLALQAAE KSFYEVLSET  660
HLPLRHIDEA SANPDGNFVQ NSSSSSAANN FVDSNWFSDL GHFGASLEHT PP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_B3e-12342488237385Protein SHORT-ROOT
5b3h_E3e-12342488237385Protein SHORT-ROOT
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1247267RKKLQKNGESKANGKAGRRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4692910.0AM469291.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X259333.7, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002280765.10.0PREDICTED: scarecrow-like protein 14
TrEMBLA0A438G1D60.0A0A438G1D6_VITVI; Scarecrow-like protein 33
STRINGVIT_06s0004g04980.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.12e-73SCARECROW-like 14