PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01024931001 | ||||||||
Common Name | VIT_06s0004g04990 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | GRAS | ||||||||
Protein Properties | Length: 379aa MW: 43613.2 Da PI: 9.2976 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 83.5 | 3.7e-26 | 107 | 184 | 75 | 152 |
GRAS 75 seelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspes 152 ++ + a+k++ ++P+ ++s++ N +I + +e+++r+HiiDf+i G+QWp+++q L++Rp+gpp+lRiTg++ p++ GSVIVT01024931001 107 ADIIRAYKVYASACPFKRMSYFFGNWMIGKVAEKATRLHIIDFGILFGFQWPSFIQHLSQRPGGPPRLRITGIDFPQP 184 67899********************************************************************99876 PP | |||||||
2 | GRAS | 164 | 1.3e-50 | 185 | 376 | 183 | 374 |
GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274 a+++e+++le+L+++++E+l+Vn+ ++l++llde+v + +rd+vL+l+++++P+++++ + n++ Fl rf eal+ y alfd+l+a+ GSVIVT01024931001 185 AEKWENIRLEDLKIDKDEKLVVNSLYRLKNLLDETVVEDCPRDAVLNLIRRINPEIFIHGIVSGSFNGPFFLLRFKEALHQYDALFDMLDAT 276 5799********************************9999**************************************************** PP GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrp 366 +pre+++r+ E+++ gr +n++a+eg+er+er et+++W++r +aGF+++ l++++ + +++ +++ + ++vee+ g++++gWk+r+ GSVIVT01024931001 277 VPREDQDRMLFEKVVYGRYSMNIIAHEGSERFERPETYKQWQARNVKAGFRQLLLDQEILSRVRTTVKQGFHKNFMVEEDGGWMLQGWKGRT 368 ******************************************************************99877788****************** PP GRAS 367 LvsvSaWr 374 + ++S+W+ GSVIVT01024931001 369 IHALSCWK 376 *******8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 28.353 | 1 | 356 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.3E-23 | 107 | 184 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.4E-48 | 185 | 376 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 379 aa Download sequence Send to blast |
MAVHAQNSEP PNVFDEALLY NDLNMSKLCI NDDEASKKLQ QNERSKGSNT KVGRVKRRSK 60 GEVVDLRSLL IQCAQAVAGN DQRAATELLK LIRQHSSPMG IERPLAADII RAYKVYASAC 120 PFKRMSYFFG NWMIGKVAEK ATRLHIIDFG ILFGFQWPSF IQHLSQRPGG PPRLRITGID 180 FPQPAEKWEN IRLEDLKIDK DEKLVVNSLY RLKNLLDETV VEDCPRDAVL NLIRRINPEI 240 FIHGIVSGSF NGPFFLLRFK EALHQYDALF DMLDATVPRE DQDRMLFEKV VYGRYSMNII 300 AHEGSERFER PETYKQWQAR NVKAGFRQLL LDQEILSRVR TTVKQGFHKN FMVEEDGGWM 360 LQGWKGRTIH ALSCWKPC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 5e-30 | 72 | 377 | 25 | 380 | Protein SCARECROW |
5b3h_A | 5e-30 | 72 | 377 | 24 | 379 | Protein SCARECROW |
5b3h_D | 5e-30 | 72 | 377 | 24 | 379 | Protein SCARECROW |
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Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, shoots, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM469291 | 0.0 | AM469291.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X259333.7, clone ENTAV 115. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019075847.1 | 0.0 | PREDICTED: scarecrow-like protein 14 | ||||
Swissprot | Q9XE58 | 1e-118 | SCL14_ARATH; Scarecrow-like protein 14 | ||||
TrEMBL | F6GUZ8 | 0.0 | F6GUZ8_VITVI; Uncharacterized protein | ||||
STRING | VIT_06s0004g04990.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP266 | 15 | 129 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 1e-120 | SCARECROW-like 14 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01024931001 |
Publications ? help Back to Top | |||
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