PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01024774001 | ||||||||
Common Name | LOC104879608, VIT_06s0004g06280 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | MYB | ||||||||
Protein Properties | Length: 462aa MW: 50795.9 Da PI: 6.5136 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.5 | 1.3e-17 | 138 | 184 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEd +l+++v+++G + W+ Ia+++g gR +kqc++rw+++l GSVIVT01024774001 138 KGQWSAEEDRQLLRLVNEFGEKKWAQIAKKLG-GRAGKQCRERWHNHL 184 799*****************************.*************97 PP | |||||||
2 | Myb_DNA-binding | 40.2 | 7.6e-13 | 190 | 232 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++ W +eE+ +l++ +k+ G++ W+ Ia+++ gRt++ +k++++ GSVIVT01024774001 190 KDEWDEEEERILIEWHKKVGNK-WAEIAKRIT-GRTENTIKNHFN 232 678*******************.********9.**********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 28.4 | 133 | 188 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.31E-28 | 136 | 231 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.6E-17 | 137 | 186 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-26 | 139 | 192 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 3.4E-17 | 141 | 198 | No hit | No description |
CDD | cd00167 | 1.20E-15 | 141 | 184 | No hit | No description |
SMART | SM00717 | 5.2E-12 | 189 | 237 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 15.768 | 189 | 239 | IPR017930 | Myb domain |
CDD | cd00167 | 1.62E-9 | 192 | 235 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.1E-17 | 193 | 237 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0051302 | Biological Process | regulation of cell division | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 462 aa Download sequence Send to blast |
MAGGGGGGFD GFGGLGSGFG CGNFQSHHPV YRPSPPLTAI DRFLVGQSHF SQRQTQNSER 60 NSGDVVSSNG FHDFYSASGA IGSIGSGGSW QFLEEDGLNL KEKKSSEVVQ SGEEKVAKRS 120 SRASGKRAKG GSSATLIKGQ WSAEEDRQLL RLVNEFGEKK WAQIAKKLGG RAGKQCRERW 180 HNHLRPDIRK DEWDEEEERI LIEWHKKVGN KWAEIAKRIT GRTENTIKNH FNATKRRQDS 240 RKKSNKDDQK PQSTLLQVYI KSKKLDDKWT TTTTTQNATA TPTSSTISED LPTTHYKAFL 300 QDFSESTVHD SPSLMTQTCD EELLFMQNLF SSDCGNPPFV GTSENISSKG AEEPIEEQDD 360 MALDSFDLFQ ASGSAECGST SIQGKASSTH LHSDIYISNL LNGTSTPSSA SIDHYYSYNI 420 NPMNVEFLTD PPSSSSGKRE MDLIEMLSCS GFCNQGTHTN L* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 3e-41 | 136 | 238 | 2 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 3e-41 | 136 | 238 | 2 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM439295 | 0.0 | AM439295.1 Vitis vinifera, whole genome shotgun sequence, contig VV79X001195.2, clone ENTAV 115. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010651431.1 | 0.0 | PREDICTED: myb-related protein Myb4 | ||||
TrEMBL | D7SK07 | 0.0 | D7SK07_VITVI; Uncharacterized protein | ||||
STRING | VIT_06s0004g06280.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11050.1 | 5e-60 | myb domain protein 64 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01024774001 |
Entrez Gene | 104879608 |