PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01024774001
Common NameLOC104879608, VIT_06s0004g06280
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MYB
Protein Properties Length: 462aa    MW: 50795.9 Da    PI: 6.5136
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01024774001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.51.3e-17138184148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        +g W++eEd +l+++v+++G + W+ Ia+++g gR +kqc++rw+++l
  GSVIVT01024774001 138 KGQWSAEEDRQLLRLVNEFGEKKWAQIAKKLG-GRAGKQCRERWHNHL 184
                        799*****************************.*************97 PP

2Myb_DNA-binding40.27.6e-13190232145
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                        ++ W +eE+ +l++ +k+ G++ W+ Ia+++  gRt++ +k++++
  GSVIVT01024774001 190 KDEWDEEEERILIEWHKKVGNK-WAEIAKRIT-GRTENTIKNHFN 232
                        678*******************.********9.**********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129428.4133188IPR017930Myb domain
SuperFamilySSF466894.31E-28136231IPR009057Homeodomain-like
SMARTSM007171.6E-17137186IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-26139192IPR009057Homeodomain-like
PfamPF139213.4E-17141198No hitNo description
CDDcd001671.20E-15141184No hitNo description
SMARTSM007175.2E-12189237IPR001005SANT/Myb domain
PROSITE profilePS5129415.768189239IPR017930Myb domain
CDDcd001671.62E-9192235No hitNo description
Gene3DG3DSA:1.10.10.606.1E-17193237IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0051302Biological Processregulation of cell division
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MAGGGGGGFD GFGGLGSGFG CGNFQSHHPV YRPSPPLTAI DRFLVGQSHF SQRQTQNSER  60
NSGDVVSSNG FHDFYSASGA IGSIGSGGSW QFLEEDGLNL KEKKSSEVVQ SGEEKVAKRS  120
SRASGKRAKG GSSATLIKGQ WSAEEDRQLL RLVNEFGEKK WAQIAKKLGG RAGKQCRERW  180
HNHLRPDIRK DEWDEEEERI LIEWHKKVGN KWAEIAKRIT GRTENTIKNH FNATKRRQDS  240
RKKSNKDDQK PQSTLLQVYI KSKKLDDKWT TTTTTQNATA TPTSSTISED LPTTHYKAFL  300
QDFSESTVHD SPSLMTQTCD EELLFMQNLF SSDCGNPPFV GTSENISSKG AEEPIEEQDD  360
MALDSFDLFQ ASGSAECGST SIQGKASSTH LHSDIYISNL LNGTSTPSSA SIDHYYSYNI  420
NPMNVEFLTD PPSSSSGKRE MDLIEMLSCS GFCNQGTHTN L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C3e-411362382104C-Myb DNA-Binding Domain
1msf_C3e-411362382104C-Myb DNA-Binding Domain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4392950.0AM439295.1 Vitis vinifera, whole genome shotgun sequence, contig VV79X001195.2, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010651431.10.0PREDICTED: myb-related protein Myb4
TrEMBLD7SK070.0D7SK07_VITVI; Uncharacterized protein
STRINGVIT_06s0004g06280.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11050.15e-60myb domain protein 64