PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01024624001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family WRKY
Protein Properties Length: 571aa    MW: 63600.9 Da    PI: 7.718
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01024624001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.51.1e-32277334260
                        --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                        +DgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkvers  +++v+ei+Y+g+Hnh+k
  GSVIVT01024624001 277 EDGYNWRKYGQKQVKGSENPRSYYKCTYPNCPTKKKVERSL-EGQVTEIVYKGTHNHPK 334
                        7****************************************.***************85 PP
2WRKY105.52.7e-33432490159
                        ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        ldDgy+WrKYGqK+vkg+++prsYY+Ct +gCpv+k+ver+++d ++v++tYeg+Hnh+
  GSVIVT01024624001 432 LDDGYRWRKYGQKVVKGNPNPRSYYKCTNPGCPVRKHVERASHDLRAVITTYEGKHNHD 490
                        59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.8E-28266335IPR003657WRKY domain
PROSITE profilePS5081123.02271335IPR003657WRKY domain
SuperFamilySSF1182904.18E-25272335IPR003657WRKY domain
SMARTSM007742.2E-35276334IPR003657WRKY domain
PfamPF031063.3E-25277333IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.9E-37417492IPR003657WRKY domain
SuperFamilySSF1182903.01E-29424492IPR003657WRKY domain
PROSITE profilePS5081138.377427492IPR003657WRKY domain
SMARTSM007743.1E-39432491IPR003657WRKY domain
PfamPF031069.2E-26433490IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009753Biological Processresponse to jasmonic acid
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010120Biological Processcamalexin biosynthetic process
GO:0010200Biological Processresponse to chitin
GO:0010508Biological Processpositive regulation of autophagy
GO:0042742Biological Processdefense response to bacterium
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0070370Biological Processcellular heat acclimation
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 571 aa     Download sequence    Send to blast
MGINPIPHYD INTEDYLNTF WRKETTWHDS TQIAIVRMHP TAEKLSQWKE KASPFHMGSS  60
SGSLETSANS HPLFSFSSFM STSYSDLLTS ADEDPRTGSG VPKFKSIPPP SLPISPPPIS  120
PSSYFSIPAG LSPAELLDSP VLLSTSNILP SPTTGTFPSQ GFNWRSNSNS NQQDVKREDK  180
NYLDFSFQPQ ARPSTTSASM FQPSTTTITT EQALRGQQPA WSFQEPTKQD SFSSEKTTIA  240
TIQTNTQSNG NGNNGFQSDY GSYHASSQSI REQRRSEDGY NWRKYGQKQV KGSENPRSYY  300
KCTYPNCPTK KKVERSLEGQ VTEIVYKGTH NHPKPQSTRR SSLSSSQTIQ ASNPPNNEVP  360
DQPFNSSISM GDDDFEQSSQ KSKSGGDDFD EDEPEAKRWK KESENEGISA PGSRTVREPR  420
VVVQTTSDID ILDDGYRWRK YGQKVVKGNP NPRSYYKCTN PGCPVRKHVE RASHDLRAVI  480
TTYEGKHNHD VPAARGSGSH SVNRPLPLPD TTAAATTNNN MPMAIRPSIM THLPNNSTTN  540
PLRHPQHQDN VFSRTKEEPR DDMLFESLLC *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-37268493878Probable WRKY transcription factor 4
2lex_A2e-37268493878Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.69990.0bud| flower| fruit| inflorescence| leaf| root
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: In dry seeds, expressed in aleurone cells and embryos. Levels drop rapidly but transiently in the embryos of imbibed seeds. {ECO:0000250|UniProtKB:Q6IEQ7}.
UniprotTISSUE SPECIFICITY: Expressed in aleurone cells. Mostly expressed in aleurone layers and leaves, and, to a lower extent, in roots, panicles and embryos. {ECO:0000250|UniProtKB:Q6IEQ7}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00299DAPTransfer from AT2G38470Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM8861680.0AM886168.1 Vitis thunbergii mRNA for DNA-binding protein (wrky7 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002272040.10.0PREDICTED: WRKY transcription factor WRKY24
SwissprotQ6B6R41e-142WRK24_ORYSI; WRKY transcription factor WRKY24
TrEMBLF6GUH80.0F6GUH8_VITVI; Uncharacterized protein
STRINGVIT_06s0004g07500.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.11e-107WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]