PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01024592001 | ||||||||
Common Name | LOC100262112, VIT_06s0004g07790 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | LBD | ||||||||
Protein Properties | Length: 230aa MW: 24921.4 Da PI: 8.478 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 128.9 | 2.2e-40 | 44 | 143 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +CaaCk+lrr+Ca++C+++pyf ++p+kfa+vhk+FGasnv+k+l ++ e++r da++slv+eA+ r+rdPvyG++g i++lq+q+++l++ GSVIVT01024592001 44 PCAACKLLRRRCAEECPFSPYFSPHEPHKFAAVHKVFGASNVSKMLMDVAENQRADAVNSLVFEANLRLRDPVYGCMGAISALQHQVHSLQT 135 7******************************************************************************************* PP DUF260 93 elallkee 100 el+++k+e GSVIVT01024592001 136 ELNAVKAE 143 ****9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.378 | 43 | 144 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.1E-40 | 44 | 141 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0016020 | Cellular Component | membrane |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MSRERERLFD EVGKKIKRET DHKSSHMGRR QLLGPPGTLN TITPCAACKL LRRRCAEECP 60 FSPYFSPHEP HKFAAVHKVF GASNVSKMLM DVAENQRADA VNSLVFEANL RLRDPVYGCM 120 GAISALQHQV HSLQTELNAV KAEILKYKYR EAASTIISSS HAALVSSESD SISAVSLPSS 180 LPPPPLPLPP PTPSVVSSSP PSASSLYTIL PSSTTGYSSI TSDNIPYFD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-44 | 36 | 151 | 3 | 118 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-44 | 36 | 151 | 3 | 118 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.19954 | 0.0 | fruit |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM425638 | 0.0 | AM425638.2 Vitis vinifera contig VV78X076982.4, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002269676.1 | 1e-167 | PREDICTED: LOB domain-containing protein 15 isoform X1 | ||||
Swissprot | Q8L5T5 | 1e-80 | LBD15_ARATH; LOB domain-containing protein 15 | ||||
TrEMBL | D7SJL6 | 1e-166 | D7SJL6_VITVI; Uncharacterized protein | ||||
STRING | VIT_06s0004g07790.t01 | 1e-167 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP60 | 16 | 318 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40470.1 | 4e-80 | LOB domain-containing protein 15 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01024592001 |
Entrez Gene | 100262112 |
Publications ? help Back to Top | |||
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