PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01024359001 | ||||||||
Common Name | VIT_16s0039g01750 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | MYB | ||||||||
Protein Properties | Length: 291aa MW: 34001.3 Da PI: 9.6476 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30.8 | 6.9e-10 | 100 | 147 | 1 | 48 |
TSSS-HHHHHHHHHHH.HHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdav.kqlGggtWktIartmgkgRtlkqcksrwqkyl 48 r rWT+eEd l ++ + l + W Ia+ g+ R++k+c++rw ++l GSVIVT01024359001 100 RPRWTEEEDRMLFECKgRNLDLP-WPDIAELAGLSRSGKSCRDRWKNHL 147 78*******97776662666777.***********************97 PP | |||||||
2 | Myb_DNA-binding | 33.3 | 1.1e-10 | 153 | 199 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++eEde +++++ + + W++ + + +R++k+c++rw ++l GSVIVT01024359001 153 RGNFSQEEDETIIRLHSSHENSIWRASSCQLE-NRSGKSCRERWKNHL 199 89************************888887.*************97 PP | |||||||
3 | Myb_DNA-binding | 53 | 7.7e-17 | 205 | 250 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++eEde +++++ +G+ W+ Ia +++ gRt++ +k+rw+ +l GSVIVT01024359001 205 RGNFSQEEDETIIRLHSSHGNS-WAFIATHLP-GRTDNALKNRWNHHL 250 89******************99.*********.************886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.783 | 48 | 94 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 5.8E-7 | 50 | 95 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.59E-6 | 51 | 95 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 12 | 52 | 98 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 0.00128 | 55 | 95 | No hit | No description |
PROSITE profile | PS51294 | 16.41 | 95 | 151 | IPR017930 | Myb domain |
SMART | SM00717 | 5.9E-9 | 99 | 149 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.93E-17 | 102 | 174 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.1E-17 | 102 | 164 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.07E-5 | 102 | 147 | No hit | No description |
Pfam | PF13921 | 4.1E-13 | 103 | 162 | No hit | No description |
PROSITE profile | PS50090 | 10.302 | 148 | 199 | IPR017877 | Myb-like domain |
SMART | SM00717 | 2.2E-7 | 152 | 201 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.82E-6 | 155 | 199 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.7E-18 | 165 | 206 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 8.72E-24 | 182 | 253 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 26.376 | 200 | 254 | IPR017930 | Myb domain |
SMART | SM00717 | 4.4E-16 | 204 | 252 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.6E-15 | 205 | 249 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-24 | 207 | 254 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.98E-10 | 207 | 250 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009032 | anatomy | petal | ||||
PO:0007016 | developmental stage | whole plant flowering stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 291 aa Download sequence Send to blast |
MGRASLVFFA VIVFIYLFSC SIFHGSSFIG LISSISAGKS VMETPQQTSG LETRPWTKEE 60 DQKLFECKSK NRHLSWPEIA MLTELERSRK RCRERPEEQR PRWTEEEDRM LFECKGRNLD 120 LPWPDIAELA GLSRSGKSCR DRWKNHLDPN VKRGNFSQEE DETIIRLHSS HENSIWRASS 180 CQLENRSGKS CRERWKNHLD SNVKRGNFSQ EEDETIIRLH SSHGNSWAFI ATHLPGRTDN 240 ALKNRWNHHL KNKLIGREDK LGLLGFSESK EKEAERFRNE RRRLGVFRFS * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 7e-32 | 56 | 254 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 7e-32 | 56 | 254 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM446897 | 1e-156 | AM446897.2 Vitis vinifera contig VV78X206832.1, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010662177.1 | 1e-138 | PREDICTED: trichome differentiation protein GL1 | ||||
TrEMBL | D7T7M2 | 0.0 | D7T7M2_VITVI; Uncharacterized protein | ||||
STRING | VIT_16s0039g01750.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65230.1 | 1e-29 | myb domain protein 53 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01024359001 |