PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01024353001 | ||||||||
Common Name | LOC100251104, VIT_16s0039g01710 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | MYB | ||||||||
Protein Properties | Length: 269aa MW: 30086.9 Da PI: 7.0798 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 61.9 | 1.3e-19 | 12 | 59 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++lv++++++G g+W++ ++ g++R++k+c++rw +yl GSVIVT01024353001 12 KGPWTPEEDQKLVEYIQRHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 59 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 53.5 | 5.4e-17 | 65 | 110 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ eE+ +++++ lG++ W++Ia +++ gRt++++k++w+++l GSVIVT01024353001 65 RGKFSDEEENTIINLHSVLGNK-WSAIATHLP-GRTDNEIKNFWNTHL 110 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.475 | 7 | 59 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.24E-32 | 9 | 106 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.1E-16 | 11 | 61 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.8E-18 | 12 | 59 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-25 | 13 | 66 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.34E-12 | 14 | 59 | No hit | No description |
PROSITE profile | PS51294 | 26.724 | 60 | 114 | IPR017930 | Myb domain |
SMART | SM00717 | 4.6E-16 | 64 | 112 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.9E-16 | 65 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.15E-11 | 67 | 110 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.6E-27 | 67 | 115 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 269 aa Download sequence Send to blast |
MARSPEESGL KKGPWTPEED QKLVEYIQRH GHGSWRALPK LAGLNRCGKS CRLRWTNYLR 60 PDIKRGKFSD EEENTIINLH SVLGNKWSAI ATHLPGRTDN EIKNFWNTHL KKKLMQMGID 120 PVTHRPRTDL NILANLPQLL AAANLSTSLV NNPWDNALRL QSDATQLAKL HLLHNLLQYP 180 TSNPQLNGLI GLHPTDPAQT LSNELGSLYA IPALVSASPE PSTVNQKEKK IEPAHDISNP 240 SSTSTTFEAW GELMDDEASD SYWRDLIE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-30 | 10 | 114 | 5 | 108 | B-MYB |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Specifically and transiently expressed in root endodermal cells overlying the early stages of lateral root primordia formation. {ECO:0000269|PubMed:24902892, ECO:0000269|PubMed:25482809}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM452474 | 1e-153 | AM452474.2 Vitis vinifera contig VV78X049355.22, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003634006.1 | 0.0 | PREDICTED: transcription factor MYB39 | ||||
Swissprot | Q9S9Z2 | 4e-87 | MYB93_ARATH; Transcription factor MYB93 | ||||
TrEMBL | A0A438GG89 | 0.0 | A0A438GG89_VITVI; Transcription factor MYB39 | ||||
TrEMBL | F6HEE4 | 0.0 | F6HEE4_VITVI; Uncharacterized protein | ||||
STRING | VIT_16s0039g01710.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34670.1 | 3e-82 | myb domain protein 93 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01024353001 |
Entrez Gene | 100251104 |
Publications ? help Back to Top | |||
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