PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01024353001
Common NameLOC100251104, VIT_16s0039g01710
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MYB
Protein Properties Length: 269aa    MW: 30086.9 Da    PI: 7.0798
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01024353001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.91.3e-191259148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g+WT+eEd++lv++++++G g+W++ ++  g++R++k+c++rw +yl
  GSVIVT01024353001 12 KGPWTPEEDQKLVEYIQRHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 59
                       79********************************************97 PP

2Myb_DNA-binding53.55.4e-1765110148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        rg+++ eE+  +++++  lG++ W++Ia +++ gRt++++k++w+++l
  GSVIVT01024353001  65 RGKFSDEEENTIINLHSVLGNK-WSAIATHLP-GRTDNEIKNFWNTHL 110
                        89********************.*********.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.475759IPR017930Myb domain
SuperFamilySSF466896.24E-329106IPR009057Homeodomain-like
SMARTSM007178.1E-161161IPR001005SANT/Myb domain
PfamPF002491.8E-181259IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-251366IPR009057Homeodomain-like
CDDcd001673.34E-121459No hitNo description
PROSITE profilePS5129426.72460114IPR017930Myb domain
SMARTSM007174.6E-1664112IPR001005SANT/Myb domain
PfamPF002498.9E-1665110IPR001005SANT/Myb domain
CDDcd001671.15E-1167110No hitNo description
Gene3DG3DSA:1.10.10.601.6E-2767115IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MARSPEESGL KKGPWTPEED QKLVEYIQRH GHGSWRALPK LAGLNRCGKS CRLRWTNYLR  60
PDIKRGKFSD EEENTIINLH SVLGNKWSAI ATHLPGRTDN EIKNFWNTHL KKKLMQMGID  120
PVTHRPRTDL NILANLPQLL AAANLSTSLV NNPWDNALRL QSDATQLAKL HLLHNLLQYP  180
TSNPQLNGLI GLHPTDPAQT LSNELGSLYA IPALVSASPE PSTVNQKEKK IEPAHDISNP  240
SSTSTTFEAW GELMDDEASD SYWRDLIE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-30101145108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Specifically and transiently expressed in root endodermal cells overlying the early stages of lateral root primordia formation. {ECO:0000269|PubMed:24902892, ECO:0000269|PubMed:25482809}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4524741e-153AM452474.2 Vitis vinifera contig VV78X049355.22, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003634006.10.0PREDICTED: transcription factor MYB39
SwissprotQ9S9Z24e-87MYB93_ARATH; Transcription factor MYB93
TrEMBLA0A438GG890.0A0A438GG89_VITVI; Transcription factor MYB39
TrEMBLF6HEE40.0F6HEE4_VITVI; Uncharacterized protein
STRINGVIT_16s0039g01710.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34670.13e-82myb domain protein 93
Publications ? help Back to Top
  1. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]