PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01024326001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | GRF | ||||||||
Protein Properties | Length: 374aa MW: 41529.9 Da PI: 8.4738 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 78.3 | 7.7e-25 | 127 | 171 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e+ GSVIVT01024326001 127 DPEPGRCRRTDGKKWRCSKDAYPDSKYCERHMHRGRNRSRKPVES 171 79****************************************986 PP | |||||||
2 | QLQ | 63.6 | 5.2e-22 | 65 | 101 | 1 | 37 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 s+FT +Q+q+L++Q+l++KyL+a++PvPp+L+++iqk GSVIVT01024326001 65 SPFTVSQWQELEHQALIFKYLMAGLPVPPDLVLPIQK 101 89*********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 1.5E-12 | 65 | 101 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 24.481 | 66 | 101 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 4.1E-16 | 66 | 100 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.762 | 127 | 171 | IPR014977 | WRC domain |
Pfam | PF08879 | 4.5E-21 | 128 | 170 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 374 aa Download sequence Send to blast |
MKQSFVGVSS QTEAETRARE SDTQTHPQRN LSHCPQKHPQ NLQRTQNGGS VGGASMATGM 60 MVRSSPFTVS QWQELEHQAL IFKYLMAGLP VPPDLVLPIQ KSFESMSSRF FHHPTMGYCS 120 FYGKKVDPEP GRCRRTDGKK WRCSKDAYPD SKYCERHMHR GRNRSRKPVE SQTTTQSSST 180 VTSLTVTGGS GSGAGTFQNL PLQNFNNPQG GPGSGTNQSQ FHMEPIPYGI PNKDYRYLHG 240 LKPEVGEHSF FSEASGSNRG LQMDSPLDST WPLMPSRVSS FPPSKSSENS ILQSDYPQHS 300 FFSSEFASGE VVKQEGQSLR PFFDEWPKTR DSWSGLEEER SNQTSFSTTQ LSISIPMASS 360 DFSTTSSRSP HDN* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.5492 | 0.0 | bud| inflorescence| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FQ382488 | 0.0 | FQ382488.1 Vitis vinifera clone SS0ABG55YD19. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002270427.2 | 0.0 | PREDICTED: growth-regulating factor 4 isoform X2 | ||||
Swissprot | Q6AWY6 | 7e-96 | GRF3_ORYSJ; Growth-regulating factor 3 | ||||
TrEMBL | F6HEC9 | 0.0 | F6HEC9_VITVI; Uncharacterized protein | ||||
STRING | VIT_16s0039g01450.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP460 | 16 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 4e-46 | growth-regulating factor 5 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01024326001 |