PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01024326001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family GRF
Protein Properties Length: 374aa    MW: 41529.9 Da    PI: 8.4738
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01024326001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC78.37.7e-25127171145
                WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                        d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e+
  GSVIVT01024326001 127 DPEPGRCRRTDGKKWRCSKDAYPDSKYCERHMHRGRNRSRKPVES 171
                        79****************************************986 PP
2QLQ63.65.2e-2265101137
                QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                        s+FT +Q+q+L++Q+l++KyL+a++PvPp+L+++iqk
  GSVIVT01024326001  65 SPFTVSQWQELEHQALIFKYLMAGLPVPPDLVLPIQK 101
                        89*********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.5E-1265101IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166624.48166101IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088804.1E-1666100IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.762127171IPR014977WRC domain
PfamPF088794.5E-21128170IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MKQSFVGVSS QTEAETRARE SDTQTHPQRN LSHCPQKHPQ NLQRTQNGGS VGGASMATGM  60
MVRSSPFTVS QWQELEHQAL IFKYLMAGLP VPPDLVLPIQ KSFESMSSRF FHHPTMGYCS  120
FYGKKVDPEP GRCRRTDGKK WRCSKDAYPD SKYCERHMHR GRNRSRKPVE SQTTTQSSST  180
VTSLTVTGGS GSGAGTFQNL PLQNFNNPQG GPGSGTNQSQ FHMEPIPYGI PNKDYRYLHG  240
LKPEVGEHSF FSEASGSNRG LQMDSPLDST WPLMPSRVSS FPPSKSSENS ILQSDYPQHS  300
FFSSEFASGE VVKQEGQSLR PFFDEWPKTR DSWSGLEEER SNQTSFSTTQ LSISIPMASS  360
DFSTTSSRSP HDN*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.54920.0bud| inflorescence| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3824880.0FQ382488.1 Vitis vinifera clone SS0ABG55YD19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002270427.20.0PREDICTED: growth-regulating factor 4 isoform X2
SwissprotQ6AWY67e-96GRF3_ORYSJ; Growth-regulating factor 3
TrEMBLF6HEC90.0F6HEC9_VITVI; Uncharacterized protein
STRINGVIT_16s0039g01450.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP4601684
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.14e-46growth-regulating factor 5