PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01024224001
Common NameLOC100262246, VIT_03s0038g00050
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family TALE
Protein Properties Length: 584aa    MW: 64175.5 Da    PI: 6.7428
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01024224001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.62.4e-093814181954
                        HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
           Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                        Fe   ++yp+ +++  LA+++gLt +qV++WF N R +
  GSVIVT01024224001 381 FEHflHPYPKDSDKIMLARQTGLTRSQVSNWFINARVR 418
                        664459******************************88 PP
2BELL127.74.2e-41243314172
               BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                        erq+lq+k +kLl +l+eVd+rYkqy++q+q+v+ssF+++ag g+akpYt+lAl++iSrhFrcL+dai++qi
  GSVIVT01024224001 243 ERQDLQNKLTKLLAMLDEVDRRYKQYYHQMQIVVSSFDVIAGSGAAKPYTALALQTISRHFRCLRDAITGQI 314
                        799********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005747.7E-61179312IPR006563POX domain
PfamPF075261.1E-49185311IPR006563POX domain
PROSITE profilePS5007112.163359422IPR001356Homeobox domain
SMARTSM003891.0E-9362426IPR001356Homeobox domain
CDDcd000863.40E-13362423No hitNo description
SuperFamilySSF466892.01E-17363429IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.6E-29365428IPR009057Homeodomain-like
PfamPF059203.8E-18379418IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 584 aa     Download sequence    Send to blast
MATYYPSSNN QRDAAPMHYL REPLPTSYSE VPVLPTNMMY MSYPSSSGSY SDTLAGNAQQ  60
HNHNCIEIPS VAASDSTQPQ HEILSSLSGS HIVEHDFSAW RDGKNEMLVM NSLGGPASLL  120
HTGQHLQAQG LSLSLGTQIP SGIQIPSIQY RNPNQGFTSF LSPTSSVSGE VDPSSYGMSS  180
IARTIPHSKY LKAAQQLLDE VVNVRKALKQ PDSEKNQNIH ELWKASNPQE PVSNSSSELS  240
PAERQDLQNK LTKLLAMLDE VDRRYKQYYH QMQIVVSSFD VIAGSGAAKP YTALALQTIS  300
RHFRCLRDAI TGQIRATRRS LGEQDTSGNG KGVGISRLRY VDQQLRQQRA LQQLGMMQQH  360
AWRPQRGLPE SSVSILRAWL FEHFLHPYPK DSDKIMLARQ TGLTRSQVSN WFINARVRLW  420
KPMVEEMYKE EIGDADMDSN SSSENAPKAT KSDIRASEER GDDFQPSTTS TECSSLFPDG  480
IVQSDGGSDR FMAAAAAAYH MSELGRFGSG TGVSLTLGLQ HCEGGSLPIS NGGHHSFVGM  540
RGADMYNPAA SSVGTDTADF DCMDPGNRQH RFSSSHLLHD FVA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A3e-16368426563Homeobox protein Meis2
3k2a_B3e-16368426563Homeobox protein Meis2
4xrs_A3e-16368425158Homeobox protein Meis1
4xrs_B3e-16368425158Homeobox protein Meis1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.23550.0leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4368710.0AM436871.1 Vitis vinifera contig VV78X150337.7, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010647690.10.0PREDICTED: BEL1-like homeodomain protein 6
SwissprotO656851e-158BLH6_ARATH; BEL1-like homeodomain protein 6
TrEMBLF6I1B00.0F6I1B0_VITVI; Uncharacterized protein
STRINGVIT_03s0038g00050.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP13316172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34610.21e-138BEL1-like homeodomain 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Cassan-Wang H, et al.
    Identification of novel transcription factors regulating secondary cell wall formation in Arabidopsis.
    Front Plant Sci, 2013. 4: p. 189
    [PMID:23781226]