 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
GSVIVT01024194001 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
|
| Family |
GATA |
| Protein Properties |
Length: 353aa MW: 38599.6 Da PI: 8.3923 |
| Description |
GATA family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| GSVIVT01024194001 | genome | Genoscope | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GATA | 55.8 | 6.4e-18 | 279 | 312 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34
Cs+C + kTp+WR gp g+ktLCnaCG+++++ +
GSVIVT01024194001 279 CSHCLVQKTPQWRTGPLGPKTLCNACGVRFKSGR 312
*******************************987 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0030154 | Biological Process | cell differentiation |
| GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter |
| GO:0005634 | Cellular Component | nucleus |
| GO:0005667 | Cellular Component | transcription factor complex |
| GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding |
| GO:0001085 | Molecular Function | RNA polymerase II transcription factor binding |
| GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding |
| GO:0003682 | Molecular Function | chromatin binding |
| GO:0008270 | Molecular Function | zinc ion binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 353 aa
Download sequence Send
to blast |
MRWRCGIGPN KGRLEYFHWR EIKDKPLTQS KPLIIFQCCC LWNLSRLPLF NLCSSLSGMD 60
QCIESRALKE SLRREAAMKT TPQVLYDDVL CGAGVNGVSG EDFSVDDLFD FSNGGLGVGV 120
DDDNSNSSSF SGTGDFESLS AGGLAVPADD LEHLEWLSHF VDDSSASELS LLCPAVTGNS 180
PSKRCEEEPR PALLRTPLFP TPLPAKPRSK RHRSSGRAWA FGSHSPSSSP SSSSSSSSTS 240
CLIFANTVHN MESFYSLEKP PAKKPKKSPS ADSQPQRRCS HCLVQKTPQW RTGPLGPKTL 300
CNACGVRFKS GRLFPEYRPA CSPTFSVEIH SNSHRKVLEI RRKKETAEPV SG*
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AM426588 | 0.0 | AM426588.2 Vitis vinifera contig VV79X001623.2, whole genome shotgun sequence. |
| Orthologous Group
? help Back to Top |
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Representative plant | OGRP68 | 17 | 287 |
