PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01023921001
Common NameLOC100241839, VIT_03s0038g03410
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family NAC
Protein Properties Length: 280aa    MW: 31946.5 Da    PI: 8.5729
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01023921001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM151.34.4e-47111373128
                NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                        pGfrFhPt+eel+++yLk+ + gk+ ++ ++i  ++iy+++Pw Lp  +k +e+ewyfF++rd+k+ +g r+nr+t++g+Wkatg+d+++l+
  GSVIVT01023921001  11 PGFRFHPTEEELLDFYLKNIIFGKRQRF-DIIGLLNIYHYDPWALPGLAKIGEREWYFFVPRDRKHGNGGRPNRTTENGFWKATGSDRRILN 101
                        9************************888.99***************8888899**************************************9 PP

                NAM  95 k..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        +   ++ +gl+ktLvfy+grap+g+ktdWvm+eyrl
  GSVIVT01023921001 102 SsdPKRIIGLRKTLVFYEGRAPHGKKTDWVMNEYRL 137
                        8666777***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100553.8059155IPR003441NAC domain
SuperFamilySSF1019411.18E-5510155IPR003441NAC domain
PfamPF023651.1E-2411137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009965Biological Processleaf morphogenesis
GO:0010200Biological Processresponse to chitin
GO:0045792Biological Processnegative regulation of cell size
GO:0048281Biological Processinflorescence morphogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MEDMTAELEL PGFRFHPTEE ELLDFYLKNI IFGKRQRFDI IGLLNIYHYD PWALPGLAKI  60
GEREWYFFVP RDRKHGNGGR PNRTTENGFW KATGSDRRIL NSSDPKRIIG LRKTLVFYEG  120
RAPHGKKTDW VMNEYRLPDN CSIPKDIVLC KIYRKATSLK VLEQRAAMEE EMKSVHGSPS  180
SPMSSMDGIS FCSSQQEKPG PSMPMQGMVF KKEVVEEKKY ENGQEGAKGS CSSLQLPSGK  240
LTELQVPKSG TDWSQDPIWT QLGSPWLQNL NTYTNILNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-4631558168Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.201070.0flower
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269|PubMed:26834774}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269|PubMed:26834774}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU3933160.0GU393316.1 Vitis pseudoreticulata NAC transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002281816.10.0PREDICTED: NAC domain-containing protein 35
SwissprotQ10S656e-99NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBLA0A438EL330.0A0A438EL33_VITVI; NAC domain-containing protein 35
TrEMBLD7U4W30.0D7U4W3_VITVI; MYB transcription factor 94
STRINGVIT_03s0038g03410.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17040.11e-112NAC domain containing protein 36
Publications ? help Back to Top
  1. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]