PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01023886001

Common Name

LOC100267426, VIT_03s0038g03710

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

Nin-like

Protein Properties

Length: 821aa MW: 91556.6 Da PI: 7.2042

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01023886001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.6	2.8e-29	564	614	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isl++ls+yF++++kdAAk++gvc+T+LKriCRq+GI RWP+Rkik++ GSVIVT01023886001 564 EKTISLQVLSQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKV 614 79***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.097	553	634	IPR003035	RWP-RK domain
Pfam	PF02042	9.0E-25	566	614	IPR003035	RWP-RK domain
SuperFamily	SSF54277	9.08E-24	713	806	No hit	No description
Gene3D	G3DSA:3.10.20.240	4.0E-25	721	803	No hit	No description
SMART	SM00666	3.6E-27	722	805	IPR000270	PB1 domain
PROSITE profile	PS51745	25.283	722	805	IPR000270	PB1 domain
Pfam	PF00564	5.2E-20	723	804	IPR000270	PB1 domain
CDD	cd06407	1.49E-41	723	804	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 821 aa Download sequence Send to blast
MEDGSFTPNS VFGAPSDSAM DLNFMDELLF EGCWLETTDG FSFLQPGAST STEGLVGTQT 60 ELNRRLWIGP SANPGPVSSV KNRLILAIRN LREFTKERDV LIQIWVPIER GGKNVLTTND 120 QPFSLDPDCQ SLANYRNVSE NYHFPAEEDS KEQVGLPGRV FLGKVPEWTP DVRFFKSEEY 180 PRINYAQRYN VRGSLALPVF ERGSGVCLGV IEIVTTTQKI NYRPELENVC KALEAVDLRS 240 SEVLIPPVKA CNELYQAALP EILKVLARVC RTHRLPLAQT WAPCIQQGKG GCRHSDKNYA 300 LFLSTVDHAY YVTDPKFKGF NEACFDHHLF RGQGVVGRAL TTNQPCFESD ITAFSKTEYP 360 LSHHARMFGL RAAVAIRLKS IYNGSADFIL EFFLPTDCQE TEEQKQVLNS LSIVIQQTCQ 420 IFRVVTEKDL EKESILPVGE ILFASDERVK QEGSVKLLSP PIKEPSREES SWIAHMMEAQ 480 KKGKGVSVSL EYQKEEPEEE FKVTTNWDNT EVELHHGQVF SEFGQPQQNS GAKGSVEGGG 540 DSSFGGQHSS GSRKAREKRR TKTEKTISLQ VLSQYFAGSL KDAAKSIGVC PTTLKRICRQ 600 HGITRWPSRK IKKVGHSLRK LQLVIDSVQG TQGAIQIGSF YTNFPELSSP NVPGTVPFSS 660 SKMTDDSKQL NPQSEVLFSP GVTTSKSPSS SCSQSSKLHH PCVETLPPLP KSNSRALRDG 720 GGFRIKATFG EENVRFSLQL NWSFKDLQQE IARRFGIDNM NSIDLKYLDD DCEWVLLTCD 780 ADLEECIDVY RSCQSRKIKL SLHHSSRLKL KSSAFSSGPS *

Sequence ? help Back to Top

Protein Sequence Length: 821 aa Download sequence Send to blast

MEDGSFTPNS VFGAPSDSAM DLNFMDELLF EGCWLETTDG FSFLQPGAST STEGLVGTQT  60
ELNRRLWIGP SANPGPVSSV KNRLILAIRN LREFTKERDV LIQIWVPIER GGKNVLTTND  120
QPFSLDPDCQ SLANYRNVSE NYHFPAEEDS KEQVGLPGRV FLGKVPEWTP DVRFFKSEEY  180
PRINYAQRYN VRGSLALPVF ERGSGVCLGV IEIVTTTQKI NYRPELENVC KALEAVDLRS  240
SEVLIPPVKA CNELYQAALP EILKVLARVC RTHRLPLAQT WAPCIQQGKG GCRHSDKNYA  300
LFLSTVDHAY YVTDPKFKGF NEACFDHHLF RGQGVVGRAL TTNQPCFESD ITAFSKTEYP  360
LSHHARMFGL RAAVAIRLKS IYNGSADFIL EFFLPTDCQE TEEQKQVLNS LSIVIQQTCQ  420
IFRVVTEKDL EKESILPVGE ILFASDERVK QEGSVKLLSP PIKEPSREES SWIAHMMEAQ  480
KKGKGVSVSL EYQKEEPEEE FKVTTNWDNT EVELHHGQVF SEFGQPQQNS GAKGSVEGGG  540
DSSFGGQHSS GSRKAREKRR TKTEKTISLQ VLSQYFAGSL KDAAKSIGVC PTTLKRICRQ  600
HGITRWPSRK IKKVGHSLRK LQLVIDSVQG TQGAIQIGSF YTNFPELSSP NVPGTVPFSS  660
SKMTDDSKQL NPQSEVLFSP GVTTSKSPSS SCSQSSKLHH PCVETLPPLP KSNSRALRDG  720
GGFRIKATFG EENVRFSLQL NWSFKDLQQE IARRFGIDNM NSIDLKYLDD DCEWVLLTCD  780
ADLEECIDVY RSCQSRKIKL SLHHSSRLKL KSSAFSSGPS *

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Vvi.15147	0.0	fruit\| inflorescence\| stem

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM477505	0.0	AM477505.2 Vitis vinifera contig VV78X063132.15, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010645880.1	0.0	PREDICTED: protein NLP2
Refseq	XP_010645886.1	0.0	PREDICTED: protein NLP2
Refseq	XP_010645896.1	0.0	PREDICTED: protein NLP2
Swissprot	Q8H111	0.0	NLP1_ARATH; Protein NLP1
TrEMBL	A0A438JSZ8	0.0	A0A438JSZ8_VITVI; Protein NLP2
TrEMBL	F6I0S7	0.0	F6I0S7_VITVI; Uncharacterized protein
STRING	VIT_03s0038g03710.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP299	16	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20640.2	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	GSVIVT01023886001
Entrez Gene	100267426

Publications ? help Back to Top
Suzuki W,Konishi M,Yanagisawa S The evolutionary events necessary for the emergence of symbiotic nitrogen fixation in legumes may involve a loss of nitrate responsiveness of the NIN transcription factor. Plant Signal Behav, 2014. [PMID:24270631]