PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01023697001
Common NameVIT_11s0037g00870
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family AP2
Protein Properties Length: 324aa    MW: 36875.9 Da    PI: 7.5982
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01023697001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.52.1e-1544103155
                AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        s y+GV++++++gr++A+++d  ++n    k+ ++++lg +  +e Aa a++ a++k++g
  GSVIVT01023697001  44 SIYRGVTRHRWTGRYEAHLWDkNCWNEsqnKKgRQVYLGAYHDEEAAAHAYDLAALKYWG 103
                        57*******************999955656446*************************98 PP
2AP251.42.6e-16146197155
                AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  GSVIVT01023697001 146 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 197
                        89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.81E-1744113IPR016177DNA-binding domain
PfamPF008473.8E-1144103IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-1645112IPR001471AP2/ERF domain
PROSITE profilePS5103219.78345111IPR001471AP2/ERF domain
SMARTSM003803.3E-2645117IPR001471AP2/ERF domain
PRINTSPR003673.4E-64657IPR001471AP2/ERF domain
CDDcd000184.51E-24146207No hitNo description
SuperFamilySSF541718.5E-18146207IPR016177DNA-binding domain
PfamPF008474.8E-12146197IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.6E-18147206IPR001471AP2/ERF domain
SMARTSM003801.2E-24147211IPR001471AP2/ERF domain
PROSITE profilePS5103218.334147205IPR001471AP2/ERF domain
PRINTSPR003673.4E-6187207IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MAKLSQQNHK NSANSNATNT TLSVTKVKRT RKTVPRDSPP QRSSIYRGVT RHRWTGRYEA  60
HLWDKNCWNE SQNKKGRQVY LGAYHDEEAA AHAYDLAALK YWGPETILNF PLSTYEKELK  120
EMEGLSREEY IGSLRRRSSG FSRGVSKYRG VARHHHNGRW EARIGRVFGN KYLYLGTYAT  180
QEEAATAYDM AAIEYRGLNA VTNFDLSRYI KWLKPNQNNP CEQPNNPNLD SNLTPNPNHD  240
FGISFLNHPQ TSGTAACKMM EMTTAADHLS TPPESELPRC SFPDDIQTYF ECQDSGSYEE  300
GDDVIFSELN SFIPPMFQCD FSA*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4322891e-125AM432289.2 Vitis vinifera contig VV78X275271.2, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010656633.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN41e-120AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLF6HYM60.0F6HYM6_VITVI; Uncharacterized protein
STRINGVIT_11s0037g00870.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.14e-97ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]