PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01023544001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family C3H
Protein Properties Length: 135aa    MW: 15360 Da    PI: 9.2463
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01023544001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.27.5e-102650327
                       S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                       ++ C ++++t tCkyG+ Ck++H++
  GSVIVT01023544001 26 QPDCGYYLKTRTCKYGSICKYHHSR 50
                       789********************95 PP
2zf-CCCH40.16.1e-137194326
                       S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
                       +++C++++rtG Ck+G  CkF+H 
  GSVIVT01023544001 71 EKPCSYYMRTGLCKFGVACKFHHL 94
                       689********************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.172350IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.6292351IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-72650IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-62854IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-42951IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.59E-76895IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.3476896IPR000571Zinc finger, CCCH-type
SMARTSM003563.7E-47095IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-107195IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-57293IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MQIRLPTAVE VNKVDTISEF LERIGQPDCG YYLKTRTCKY GSICKYHHSR DRLDAGPVSL  60
NIVGLSMRQE EKPCSYYMRT GLCKFGVACK FHHLQPASIG TGYRMWVHKP TCLLSFLLLK  120
ALYLHKVGTL TWET*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.134911e-103bud| flower| fruit
Functional Description ? help Back to Top
Source Description
UniProtPossesses RNA-binding and ribonuclease activities in vitro. {ECO:0000269|PubMed:18582464}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4305781e-106AM430578.2 Vitis vinifera contig VV78X000683.5, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002275775.12e-44PREDICTED: zinc finger CCCH domain-containing protein 3
SwissprotQ94AD91e-33C3H3_ARATH; Zinc finger CCCH domain-containing protein 3
TrEMBLF6H6252e-69F6H625_VITVI; Uncharacterized protein
STRINGVIT_14s0036g00380.t013e-70(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP12471750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.21e-35C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]