PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01023149001
Common NameLOC100264303, VIT_12s0035g01800
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family ARF
Protein Properties Length: 679aa    MW: 75389.1 Da    PI: 6.0284
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01023149001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B369.74e-22128228198
                        EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                        f+k+lt sd++++g +++ +++a+++       +++    ++l+  d++g++W +++i+r++++r++lt+GW+ Fv++++L +gD ++F   
  GSVIVT01023149001 128 FCKTLTASDTSTHGGFSVLRRHADDClppldmsQQP--PWQELVAADLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFL-- 215
                        99****************************964333..4459************************************************.. PP

                        SSSEE..EEEEE- CS
                 B3  86 grsefelvvkvfr 98 
                        + +++el+v+v+r
  GSVIVT01023149001 216 RGENGELRVGVRR 228
                        449999*****97 PP
2Auxin_resp107.71.3e-35254337183
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdld.pvrWpnSkWrsLk 83 
                        a+ha+st++ F+v+Y+Pr+s+seF+v+++k+++a ++k+svGmRfkm+fe+e+++err+sGt+vgv d + ++ W +S+WrsLk
  GSVIVT01023149001 254 ASHAISTGTLFSVFYKPRTSRSEFIVSLNKYLEARNHKLSVGMRFKMRFEGEEVPERRFSGTIVGVGDKNtSSGWADSEWRSLK 337
                        789***************************************************************98651678********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.36E-43118257IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-39125243IPR015300DNA-binding pseudobarrel domain
CDDcd100173.20E-20126228No hitNo description
SMARTSM010191.6E-20128230IPR003340B3 DNA binding domain
PROSITE profilePS5086311.18128230IPR003340B3 DNA binding domain
PfamPF023623.2E-20128228IPR003340B3 DNA binding domain
PfamPF065076.9E-34254337IPR010525Auxin response factor
PfamPF023091.1E-10550643IPR033389AUX/IAA domain
PROSITE profilePS5174527.793553646IPR000270PB1 domain
SuperFamilySSF542773.65E-12555630No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010150Biological Processleaf senescence
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 679 aa     Download sequence    Send to blast
MALVASNYPS GGPHAGAPCD ALYKELWHAC AGPLVTVPRE GERVYYFPQG HMEQLEASTT  60
HQGLDQQMPS FNLPSKILCK VVHVQLRAEP ETDEVYAQVT LLPEPDQSEI TSPDPPLPEP  120
QRCTVHSFCK TLTASDTSTH GGFSVLRRHA DDCLPPLDMS QQPPWQELVA ADLHGNEWHF  180
RHIFRGQPRR HLLTTGWSVF VSSKKLVAGD AFIFLRGENG ELRVGVRRLM RQLSNMPSSV  240
ISSHSMHLGV LATASHAIST GTLFSVFYKP RTSRSEFIVS LNKYLEARNH KLSVGMRFKM  300
RFEGEEVPER RFSGTIVGVG DKNTSSGWAD SEWRSLKVQW DEPASIFRPE RVSAWELEPL  360
VAAAAPTNLQ PAQRNKRARP PVLPSATPDL SVLGMWKSSV ESPSGFPYCD PHRGRDLYPS  420
PKFSSITKTN SFSFSGNSSP AAVSSNSMYW SNRMETATES FAPAVNKESG EKRRDTGSGC  480
RLFGFQLLDN STLEETLPVL TVGEDQPVPS LDVESDQHSE PSNINRSDIP SVSCEPDKLS  540
LRSPQESQSR QIRSCTKVHM QGIAVGRAVD LTRFDRYEDL LKKLEEMFDI QGELCGLTSI  600
WQVVYTDDED DMMMVGDDPW LEFCSMVRKI FIYTAEEVKR LSPKIKLPAM EEIKPGKLDS  660
DVAVAGTDDQ SSVVGPGC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A0.033601355Auxin response factor 1
4ldw_A0.033601355Auxin response factor 1
4ldw_B0.033601355Auxin response factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.10780.0fruit
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in the sepals and carpels of young flower buds. At stage 10 of flower development, expression in the carpels becomes restricted to the style. Also expressed in anthers and filaments. At stage 13, expressed in the region at the top of the pedicel, including the abscission zone. {ECO:0000269|PubMed:16176952}.
UniprotTISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Acts as repressor of IAA2, IAA3 and IAA7. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16176952}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00097PBMTransfer from AT1G59750Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4760950.0AM476095.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X038396.7, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010657917.10.0PREDICTED: auxin response factor 1 isoform X2
SwissprotQ8L7G00.0ARFA_ARATH; Auxin response factor 1
TrEMBLD7TGL80.0D7TGL8_VITVI; Auxin response factor
STRINGVIT_12s0035g01800.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5501582
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.30.0auxin response factor 1
Publications ? help Back to Top
  1. Montesinos JC,Pastor-Cantizano N,Robinson DG,Marcote MJ,Aniento F
    Arabidopsis p24δ5 and p24δ9 facilitate Coat Protein I-dependent transport of the K/HDEL receptor ERD2 from the Golgi to the endoplasmic reticulum.
    Plant J., 2014. 80(6): p. 1014-30
    [PMID:25312353]
  2. Marais C, et al.
    The Qb-SNARE Memb11 interacts specifically with Arf1 in the Golgi apparatus of Arabidopsis thaliana.
    J. Exp. Bot., 2015. 66(21): p. 6665-78
    [PMID:26208648]
  3. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  4. Zhang M,Hu X,Zhu M,Xu M,Wang L
    Transcription factors NF-YA2 and NF-YA10 regulate leaf growth via auxin signaling in Arabidopsis.
    Sci Rep, 2017. 7(1): p. 1395
    [PMID:28469131]