PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01022881001
Common NameVIT_12s0034g02150
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family bHLH
Protein Properties Length: 321aa    MW: 36504.4 Da    PI: 6.3752
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01022881001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.96.6e-12167218154
                        CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        r+++hn+ Er RR ++N ++  Lr+llP a   +sk+ s   i  ++ eYI +L
  GSVIVT01022881001 167 RKENHNAKERVRRMQLNASYLALRSLLPDA--RRSKRWSSPRIIDRVLEYIPEL 218
                        789**************************6..39999**************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.78E-10164223No hitNo description
PROSITE profilePS5088812.982166218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.58E-13167235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-11167232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-8167219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-6172224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0010106Biological Processcellular response to iron ion starvation
GO:0055072Biological Processiron ion homeostasis
GO:0090575Cellular ComponentRNA polymerase II transcription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007520developmental stageroot development stage
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MYDSSWSLKG TTFLGISTLQ ELEEQQVILI SIHMSSPPFN NPHYEDNSCP SLHYADLWSL  60
LQEIDISVPV DDHNSLDRMD PIMFEQENSA MVQYSSQEKG LVGDNPINPV AFDQENSTMV  120
QSSKEKGQVG GKTNLKTGER NRRIKHSQAK KTLLKHIADQ QGSSVLRKEN HNAKERVRRM  180
QLNASYLALR SLLPDARRSK RWSSPRIIDR VLEYIPELEN EIENLTLKKE NMLSSLANEQ  240
THQNQPSDLQ VPTVSVTEVR KGEVIVQICM QREPGNVLSN LMQNVEGEGM RIMSASSLHV  300
CDERVCYHLH IQVCILHNFM *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4326190.0AM432619.2 Vitis vinifera contig VV78X002135.10, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019078981.10.0PREDICTED: uncharacterized protein LOC100258265 isoform X1
TrEMBLD7SZV20.0D7SZV2_VITVI; Uncharacterized protein
STRINGVIT_12s0034g02150.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP28261129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71200.14e-31bHLH family protein