PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01022665001 | ||||||||
Common Name | VIT_02s0033g00460 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | MYB_related | ||||||||
Protein Properties | Length: 200aa MW: 22905.3 Da PI: 9.2087 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.8 | 5.7e-14 | 36 | 81 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++ +E +l ++++k+lG++ W++Ia +++ gRt++++k++w+ ++ GSVIVT01022665001 36 RGKFASDEVDLMIRLHKLLGNR-WSLIAGRLP-GRTANDVKNYWHHHR 81 799999****************.*********.***********9886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 4.925 | 1 | 30 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 1.11E-17 | 16 | 81 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.3E-9 | 16 | 42 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.364 | 31 | 85 | IPR017930 | Myb domain |
SMART | SM00717 | 3.6E-10 | 35 | 83 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-11 | 36 | 80 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.37E-8 | 42 | 80 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.9E-17 | 43 | 80 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MEKKSGIWFP LRAGLSRCRK SCRLRWFNYL KPNIKRGKFA SDEVDLMIRL HKLLGNRWSL 60 IAGRLPGRTA NDVKNYWHHH RFRKMVPIQE KGKDKAQTNS ENTLIKPKPC KLFLGFTFKT 120 TAVDAYETQG STCSELQPTL VQPNQDILWW ESLFADHTIE DQELIASLLA DETASAVDTN 180 GGGNYDFPFE MGLIDEVMR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 9e-15 | 17 | 85 | 40 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB442011 | 0.0 | AB442011.1 Vitis vinifera VvmybA3 gene for myb-related transcription factor, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019081942.1 | 1e-150 | PREDICTED: transcription factor MYB75 | ||||
Swissprot | Q9FNV9 | 4e-40 | MY113_ARATH; Transcription factor MYB113 | ||||
TrEMBL | D7U3T2 | 1e-148 | D7U3T2_VITVI; Uncharacterized protein | ||||
STRING | VIT_02s0033g00460.t01 | 1e-149 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66370.1 | 2e-42 | myb domain protein 113 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01022665001 |
Publications ? help Back to Top | |||
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