PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01022661001
Common NameLOC100249851, VIT_02s0033g00430
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MYB
Protein Properties Length: 225aa    MW: 25737.5 Da    PI: 8.4869
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01022661001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.87.7e-16855148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g+WT eEd ll ++v+ +G + W++++ + g+ R++k+c++rw++yl
  GSVIVT01022661001  8 KGKWTREEDILLRKCVENYGEEKWHLVPLRAGLSRCRKSCRLRWFNYL 55
                       79********************************************97 PP
2Myb_DNA-binding43.67e-1461106148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        rg++  +E +l ++++k+lG++ W++Ia +++ gRt++++k++w+ ++
  GSVIVT01022661001  61 RGKFASDEVDLMIRLHKLLGNR-WSLIAGRLP-GRTANDVKNYWHHHR 106
                        799999****************.*********.***********9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.866159IPR017930Myb domain
SuperFamilySSF466897.86E-275102IPR009057Homeodomain-like
SMARTSM007179.4E-13757IPR001005SANT/Myb domain
PfamPF002491.1E-14855IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-20962IPR009057Homeodomain-like
CDDcd001671.48E-91055No hitNo description
SMARTSM007174.7E-1060108IPR001005SANT/Myb domain
PROSITE profilePS5129416.46560110IPR017930Myb domain
PfamPF002491.3E-1161105IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-2063110IPR009057Homeodomain-like
CDDcd001671.34E-767105No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MESLGVTKGK WTREEDILLR KCVENYGEEK WHLVPLRAGL SRCRKSCRLR WFNYLKPNIK  60
RGKFASDEVD LMIRLHKLLG NRWSLIAGRL PGRTANDVKN YWHHHRFKKM VPIQEKGKDK  120
AQTNSENTLI KPKPCKLFLG FTFKTTAVDA SETQGSTCSE LQPTLVQPNQ DILWWESLFA  180
DHTIEDQELI ASLLADETAS AVDTNGGGNF DFPFEMGLID EVMR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-2161035101B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4538350.0AM453835.2 Vitis vinifera contig VV78X046090.12, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002265163.11e-168PREDICTED: transcription factor MYB113
SwissprotQ9FNV91e-56MY113_ARATH; Transcription factor MYB113
TrEMBLD7U3S91e-167D7U3S9_VITVI; Uncharacterized protein
STRINGVIT_02s0033g00430.t011e-168(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.16e-59myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]