PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01022659001 | ||||||||
Common Name | LOC100233098, mybA, MYBA1, VIT_02s0033g00410, VvmybA1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | MYB | ||||||||
Protein Properties | Length: 251aa MW: 28789.7 Da PI: 8.1325 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47 | 6e-15 | 8 | 55 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W +eEd ll ++++++G g W++++ + g++R++k+c++rw++yl GSVIVT01022659001 8 KGAWIQEEDVLLRKCIEKYGEGKWHLVPLRAGLNRCRKSCRLRWLNYL 55 799*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 40.6 | 6e-13 | 61 | 105 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg + +E +l ++++++lG++ W++Ia +++ gRt++++k++w+++ GSVIVT01022659001 61 RGEFALDEVDLMIRLHNLLGNR-WSLIAGRLP-GRTANDVKNYWHSH 105 6777889999************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 23.699 | 1 | 59 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.99E-26 | 5 | 102 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.1E-20 | 5 | 57 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.0E-12 | 7 | 57 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.4E-14 | 8 | 55 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.14E-9 | 10 | 55 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.1E-20 | 58 | 106 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.584 | 60 | 110 | IPR017930 | Myb domain |
SMART | SM00717 | 1.4E-10 | 60 | 108 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.7E-11 | 61 | 105 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.35E-7 | 67 | 105 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MESLGVRKGA WIQEEDVLLR KCIEKYGEGK WHLVPLRAGL NRCRKSCRLR WLNYLKPDIK 60 RGEFALDEVD LMIRLHNLLG NRWSLIAGRL PGRTANDVKN YWHSHHFKKE VQFQEEGRDK 120 PQTHSKTKAI KPHPHKFSKA LPRFELKTTA VDTFDTQVST SRKPSSTSPQ PNDDIIWWES 180 LLAEHAQMDQ ETDFSASGEM LIASLRTEET ATQKKGPMDG MIEQIQGGEG DFPFDVGFWD 240 TPNTQVNHLI * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-19 | 8 | 104 | 7 | 102 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. |
Function -- GeneRIF ? help Back to Top | ||||||
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB097923 | 0.0 | AB097923.1 Vitis vinifera VvmybA1 mRNA for myb-related transcription factor VvMYBA1, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010664911.1 | 0.0 | PREDICTED: transcription factor MYB90 | ||||
Swissprot | Q9FNV9 | 7e-61 | MY113_ARATH; Transcription factor MYB113 | ||||
TrEMBL | Q6L973 | 0.0 | Q6L973_VITVI; Myb-related transcription factor VvMYBA1 | ||||
STRING | VIT_02s0033g00410.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66370.1 | 3e-63 | myb domain protein 113 |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01022659001 |
Entrez Gene | 100233098 |