PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01022654001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MYB
Protein Properties Length: 203aa    MW: 23468.4 Da    PI: 11.2319
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01022654001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.98.4e-12855148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g+W++ Ed  l ++v+++G g  ++++   g++R++k+c++rw +yl
  GSVIVT01022654001  8 KGAWSQKEDAPLRKCVEKYGEGKRHLVPPIAGLNRCRKSCRLRWVNYL 55
                       79********************************************97 PP
2Myb_DNA-binding42.21.8e-1361105147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        rg +  +E +l ++++++lG++ W++Ia +++ gRt++++k++w+++
  GSVIVT01022654001  61 RGEFALDEVDLVIRLHNLLGNR-WSLIAGRLP-GRTANDVKNYWHTH 105
                        677888999*************.*********.***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.63155IPR017930Myb domain
SuperFamilySSF466893.28E-245102IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-16557IPR009057Homeodomain-like
SMARTSM007174.3E-7757IPR001005SANT/Myb domain
PfamPF002491.3E-9855IPR001005SANT/Myb domain
CDDcd001672.01E-51055No hitNo description
PROSITE profilePS5129420.56256110IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.8E-2058107IPR009057Homeodomain-like
SMARTSM007175.1E-1260108IPR001005SANT/Myb domain
PfamPF002494.3E-1261105IPR001005SANT/Myb domain
CDDcd001675.89E-967105No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MESLGVIKGA WSQKEDAPLR KCVEKYGEGK RHLVPPIAGL NRCRKSCRLR WVNYLKPNIK  60
RGEFALDEVD LVIRLHNLLG NRWSLIAGRL PGRTANDVKN YWHTHHFKKK VQFREEGRNK  120
PQTHSKTKVL KPSTFLDRRN FNRDRGNHKL YSGTNPGRFI DKSPLLKVII QMMLLTRKLV  180
HLVSHHPGYR NQVMILHGGK AC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-1861045102B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.124481e-149fruit
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ6875711e-151FJ687571.1 Vitis hybrid cultivar Bright's HN12 transcription factor MYBA3 (MybA3) mRNA, MybA3-5 allele, complete cds.
GenBankFJ6875791e-151FJ687579.1 Vitis hybrid cultivar Colobel transcription factor MYBA3 (MybA3) mRNA, MybA3-5 allele, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001268189.13e-88transcription factor MYB113-like
SwissprotQ9FNV98e-51MY113_ARATH; Transcription factor MYB113
TrEMBLQ2VA762e-88Q2VA76_VITVI; Transcription factor MybA
STRINGVIT_02s0033g00450.t011e-88(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.13e-53myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]