PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01022601001
Common NameVIT_08s0032g01190
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family NF-YA
Protein Properties Length: 310aa    MW: 34152.6 Da    PI: 9.6425
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01022601001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA104.59.7e-33161217158
          CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                        d p+YVNaKQy++I++RRq+Rak+e e+kl +++rkpy+heSRh hA+rRpRg+gGrF
  GSVIVT01022601001 161 DGPIYVNAKQYHGIIRRRQSRAKAELENKL-TRARKPYMHESRHLHAMRRPRGCGGRF 217
                        57****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005213.3E-36159220IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.658160220IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.9E-28163217IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.8E-24163185IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860165185IPR018362CCAAT-binding factor, conserved site
PRINTSPR006162.8E-24194217IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MQTTYFKEHA GSAHNPTGQL SSAAAVPWWS GLGSQSVYDE SFAQLKSLSM EHPGKGDQLT  60
AIKQVELGAE DGTDKGNSTQ FTIFSGECKN SEDAQKPQPL QATISMQSTI PEYQTRFELG  120
FGQPMVCVKY PYADQCYGVF SAYGHQVMGR IMLPLSLTTD DGPIYVNAKQ YHGIIRRRQS  180
RAKAELENKL TRARKPYMHE SRHLHAMRRP RGCGGRFLKK NLNGGKCGTD MKKVDNRQLS  240
QPTGSQISEV LQSDGGNMNS PKEANGNLSK LLGSEVTSMY SRRYLHQGHG IVMPSKWVAA  300
ADNRCNPKA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_A2e-18161218260HAPB protein
4g92_A2e-18161218260HAPB protein
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4563881e-153AM456388.2 Vitis vinifera contig VV78X208578.6, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002263793.10.0PREDICTED: nuclear transcription factor Y subunit A-10 isoform X1
RefseqXP_019076993.10.0PREDICTED: nuclear transcription factor Y subunit A-10 isoform X1
TrEMBLF6I3K70.0F6I3K7_VITVI; Uncharacterized protein
STRINGVIT_08s0032g01190.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP51361122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.21e-69nuclear factor Y, subunit A10