PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01022354001

Common Name

LOC100261123, VIT_07s0031g02610

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

NAC

Protein Properties

Length: 266aa MW: 30286.2 Da PI: 9.1243

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01022354001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	168.2	2.7e-52	9	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lp+GfrFhPtdeelvv+yL +k++++++++ +i+evd+yk++Pw+Lp ++ +ekewyfFs+rd+ky++g+r+nra+ sgyWkatg dk++ GSVIVT01022354001 9 LPAGFRFHPTDEELVVHYLVRKCASQSISV-PIIAEVDLYKYDPWQLPGMALYGEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKPI 99 799*************************.88***********6666689********************************* PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + ++vg+kk Lvfy g+ap+g+kt+W+mheyrl GSVIVT01022354001 100 GR--PKTVGIKKALVFYAGKAPRGVKTNWIMHEYRL 133 98..778*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.32E-63	3	159	IPR003441	NAC domain
PROSITE profile	PS51005	60.089	9	159	IPR003441	NAC domain
Pfam	PF02365	2.1E-27	10	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence Send to blast
MMSGDQLQLP AGFRFHPTDE ELVVHYLVRK CASQSISVPI IAEVDLYKYD PWQLPGMALY 60 GEKEWYFFSP RDRKYPNGSR PNRAAGSGYW KATGADKPIG RPKTVGIKKA LVFYAGKAPR 120 GVKTNWIMHE YRLANVDRSA GKKNNLRLDD WVLCRIYNKK GSAEKQHTFD QKSMKYPELE 180 DQKPKIISTT SDSVPRLHTH TDSSGSEQVM SPEKEVQSEP KWNDFDFSLY MDGFANDPFA 240 SQAQFSGDLL TSSWQDMLMF SNKSF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	8e-82	6	165	12	174	Stress-induced transcription factor NAC1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Vvi.9010	0.0	cell culture\| flower\| fruit\| inflorescence\| leaf\| pedicel\| root

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KP119497	0.0	KP119497.1 Vitis vinifera NAC2 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002274177.2	0.0	PREDICTED: NAC domain-containing protein 2
Swissprot	Q39013	1e-118	NAC2_ARATH; NAC domain-containing protein 2
TrEMBL	A0A438KJE9	0.0	A0A438KJE9_VITVI; NAC domain-containing protein 2
TrEMBL	F6H4F0	0.0	F6H4F0_VITVI; Uncharacterized protein
STRING	VIT_07s0031g02610.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP17	15	800

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01720.1	1e-121	NAC family protein

Link Out ? help Back to Top
Phytozome	GSVIVT01022354001
Entrez Gene	100261123

Publications ? help Back to Top
Florentin A,Damri M,Grafi G Stress induces plant somatic cells to acquire some features of stem cells accompanied by selective chromatin reorganization. Dev. Dyn., 2013. 242(10): p. 1121-33 [PMID:23798027] Jensen MK, et al. ATAF1 transcription factor directly regulates abscisic acid biosynthetic gene NCED3 in Arabidopsis thaliana. FEBS Open Bio, 2013. 3: p. 321-7 [PMID:23951554] Wang YX Characterization of a novel Medicago sativa NAC transcription factor gene involved in response to drought stress. Mol. Biol. Rep., 2013. 40(11): p. 6451-8 [PMID:24057250] Yang X, et al. Overexpression of a Miscanthus lutarioriparius NAC gene MlNAC5 confers enhanced drought and cold tolerance in Arabidopsis. Plant Cell Rep., 2015. 34(6): p. 943-58 [PMID:25666276] Du Q,Wang H The role of HD-ZIP III transcription factors and miR165/166 in vascular development and secondary cell wall formation. Plant Signal Behav, 2015. 10(10): p. e1078955 [PMID:26340415] Takasaki H, et al. SNAC-As, stress-responsive NAC transcription factors, mediate ABA-inducible leaf senescence. Plant J., 2015. 84(6): p. 1114-23 [PMID:26518251] Liu Y,Sun J,Wu Y Arabidopsis ATAF1 enhances the tolerance to salt stress and ABA in transgenic rice. J. Plant Res., 2016. 129(5): p. 955-962 [PMID:27216423] Ghandchi FP,Caetano-Anolles G,Clough SJ,Ort DR Investigating the Control of Chlorophyll Degradation by Genomic Correlation Mining. PLoS ONE, 2016. 11(9): p. e0162327 [PMID:27618630] Zhao J,Missihoun TD,Bartels D The ATAF1 transcription factor is a key regulator of aldehyde dehydrogenase 7B4 (ALDH7B4) gene expression in Arabidopsis thaliana. Planta, 2018. 248(4): p. 1017-1027 [PMID:30027414]