PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01022277001
Common NameLOC100264647, VIT_07s0031g01980
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family ERF
Protein Properties Length: 353aa    MW: 37908.8 Da    PI: 7.1139
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01022277001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.44.7e-20155204255
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        +y+GVr+++ +g+W+AeIrdp+    r +r++lg+f++ae Aa+a+++a+++++g
  GSVIVT01022277001 155 RYRGVRQRP-WGKWAAEIRDPY----RaARVWLGTFDSAEAAARAYDEAALRFRG 204
                        7********.**********74....57*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.7E-13155204IPR001471AP2/ERF domain
SuperFamilySSF541714.18E-22155213IPR016177DNA-binding domain
SMARTSM003802.4E-35155218IPR001471AP2/ERF domain
PROSITE profilePS5103225.449155212IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-31155213IPR001471AP2/ERF domain
PRINTSPR003673.3E-11156167IPR001471AP2/ERF domain
CDDcd000189.06E-14163214No hitNo description
PRINTSPR003673.3E-11178194IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006970Biological Processresponse to osmotic stress
GO:0009749Biological Processresponse to glucose
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MCVLKVANAR KSEQRLRVEG VRDDEMDGGA ASGVMFPGHN REREMSAMVT ALTNVVAGHV  60
SDDLVNQTGS DPCCLLGSCS WGAGHKRGRD DQGHVSESVS TISRAFGDLS HGGSSSFRVG  120
EGSVLNTNTT AASESSLMVP TYEYVDTYRG EPRRRYRGVR QRPWGKWAAE IRDPYRAARV  180
WLGTFDSAEA AARAYDEAAL RFRGNKAKLN FPENVQLRPS PSGSQATQLA ISDSPETLFS  240
VPSYTNPIVQ SQPLHRSRSS ELPGDYFNYS QMGSSSSDYF PRQPMNLLDQ MRLASPLQSS  300
SSLSSSSPLG SSVSSASSSP PPFSPFFPPQ PPSAGQSGGA DIPAPPWSDT SQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-21154215163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.177180.0cell culture
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00584DAPTransfer from AT5G64750Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4244850.0AM424485.2 Vitis vinifera contig VV78X200946.18, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002278226.10.0PREDICTED: ethylene-responsive transcription factor ERF110
TrEMBLA0A438F4U90.0A0A438F4U9_VITVI; Ethylene-responsive transcription factor ABR1
TrEMBLD7SW990.0D7SW99_VITVI; Uncharacterized protein
STRINGVIT_07s0031g01980.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64750.11e-28ERF family protein