PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01022259001
Common NameLOC100247547, VIT_07s0031g01840
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family WRKY
Protein Properties Length: 227aa    MW: 25718.2 Da    PI: 9.2006
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01022259001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.72.1e-32149207159
                        ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        ldDgy+WrKYGqK+vk++++prsYYrCt+ +C+vkk+ver aedp++v++tYeg+H h+
  GSVIVT01022259001 149 LDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHIHS 207
                        59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-33134207IPR003657WRKY domain
SuperFamilySSF1182901.15E-28141208IPR003657WRKY domain
PROSITE profilePS5081129.459144209IPR003657WRKY domain
SMARTSM007746.1E-37149208IPR003657WRKY domain
PfamPF031062.9E-25150206IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1901141Biological Processregulation of lignin biosynthetic process
GO:1904369Biological Processpositive regulation of sclerenchyma cell differentiation
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MSTTSQAMLN QGLFEDQEMP SQLGFYSFHP NLSFPQVGCQ QSLKAFNIPP SLAADAPSSL  60
TEALLSSAPT KQREDITPHL GGAQLLSLQR STANLWAWGE VNECLSSKRS IGGDDHLGVS  120
AMKMKKIKAR RKVREPRFCF KTMSEVDVLD DGYKWRKYGQ KVVKNTQHPR SYYRCTQDNC  180
RVKKRVERLA EDPRMVITTY EGRHIHSPSH DLEESQAPSH LNNFFW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-27140206874Probable WRKY transcription factor 4
2lex_A2e-27140206874Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.167600.0leaf
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ6921080.0JQ692108.1 Vitis amurensis cultivar Zuoyouhong WRKY13 transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002279024.11e-172PREDICTED: probable WRKY transcription factor 13 isoform X1
SwissprotQ9SVB74e-61WRK13_ARATH; Probable WRKY transcription factor 13
TrEMBLA0A438KK471e-171A0A438KK47_VITVI; Putative WRKY transcription factor 13
TrEMBLD7SW851e-171D7SW85_VITVI; Uncharacterized protein
TrEMBLI0AVQ11e-171I0AVQ1_9ROSI; WRKY13 transcription factor
STRINGVIT_07s0031g01840.t011e-172(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39410.16e-55WRKY DNA-binding protein 13