PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSVIVT01022182001

Common Name

VIT_07s0031g01140

Organism

Vitis vinifera

Taxonomic ID

29760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis

Family

MIKC_MADS

Protein Properties

Length: 339aa MW: 37990.9 Da PI: 6.0715

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSVIVT01022182001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	88.8	2.9e-28	9	58	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtfskRrng++KKA+ELSvLCd+++a+i+fs++g+l +s GSVIVT01022182001 9 KRIENNTNRQVTFSKRRNGLIKKAYELSVLCDIDIALIMFSHSGRLSHFS 58 79********************************************9997 PP
2	K-box	25	8.1e-10	111	180	10	79
K-box 10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqiee 79 +++ e+l+qe+++L+ +++ ++++R + + L s eL++ e++L ++l+++ ++K+ ll +++++ GSVIVT01022182001 111 VNSNVEELNQEINNLQHQLQIAEEQLRIFEPDPLAFTSTGELESCEKNLLEALNRVTERKKYLLSNHLST 180 57899************************************************************99886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	29.955	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.6E-37	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	6.02E-30	2	79	IPR002100	Transcription factor, MADS-box
CDD	cd00265	1.46E-37	2	75	No hit	No description
PRINTS	PR00404	2.5E-26	3	23	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.0E-25	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.5E-26	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.5E-26	38	59	IPR002100	Transcription factor, MADS-box
Pfam	PF01486	6.3E-6	114	181	IPR002487	Transcription factor, K-box
PROSITE profile	PS51297	6.539	115	206	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010152	Biological Process	pollen maturation
GO:0080092	Biological Process	regulation of pollen tube growth
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0009029	anatomy	stamen
PO:0025281	anatomy	pollen
PO:0007016	developmental stage	whole plant flowering stage

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence Send to blast
MGRVKLQIKR IENNTNRQVT FSKRRNGLIK KAYELSVLCD IDIALIMFSH SGRLSHFSGK 60 RRVEDVLTRY INLPDHERGG ILLNVQYLIS TLKKLKTEND IALQLANPVA VNSNVEELNQ 120 EINNLQHQLQ IAEEQLRIFE PDPLAFTSTG ELESCEKNLL EALNRVTERK KYLLSNHLST 180 YDPASIQAYL DSQEGLPTSF ENEVMGWLPE NGHNHTQMFG SDPCVPLRNH PSTNVYDNLG 240 HGTSINVDPI NMGGCHISNS GCEGLPPWHH SYTSTELLSA LMPQPSYPPP KHEMAPGSII 300 PTMMPHQQME ATSNCQHLPS GEDDSAYDKA QLPQLHVE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tqe_P	1e-17	1	77	1	77	Myocyte-specific enhancer factor 2B
1tqe_Q	1e-17	1	77	1	77	Myocyte-specific enhancer factor 2B
1tqe_R	1e-17	1	77	1	77	Myocyte-specific enhancer factor 2B
1tqe_S	1e-17	1	77	1	77	Myocyte-specific enhancer factor 2B
6c9l_A	1e-17	1	77	1	77	Myocyte-specific enhancer factor 2B
6c9l_B	1e-17	1	77	1	77	Myocyte-specific enhancer factor 2B
6c9l_C	1e-17	1	77	1	77	Myocyte-specific enhancer factor 2B
6c9l_D	1e-17	1	77	1	77	Myocyte-specific enhancer factor 2B
6c9l_E	1e-17	1	77	1	77	Myocyte-specific enhancer factor 2B
6c9l_F	1e-17	1	77	1	77	Myocyte-specific enhancer factor 2B
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269\|PubMed:12949148}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM440190	2e-97	AM440190.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X277488.14, clone ENTAV 115.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010652831.1	0.0	PREDICTED: agamous-like MADS-box protein AGL104
Swissprot	Q9LM46	8e-96	AG104_ARATH; Agamous-like MADS-box protein AGL104
TrEMBL	D7SW17	0.0	D7SW17_VITVI; Uncharacterized protein
STRING	VIT_07s0031g01140.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP16	17	761

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22130.1	3e-98	AGAMOUS-like 104

Link Out ? help Back to Top
Phytozome	GSVIVT01022182001

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]