PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01022109001 | ||||||||
Common Name | VIT_07s0031g00420 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | ERF | ||||||||
Protein Properties | Length: 97aa MW: 11249.2 Da PI: 11.105 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 31.6 | 4.2e-10 | 15 | 48 | 9 | 45 |
AP2 9 dkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAaka 45 ++ +g+Wv+eI++p +r++lg+f t e+Aa+a GSVIVT01022109001 15 HRHWGSWVCEIHHP-----LlkTRIWLGTFETTEDAARA 48 678**********8.....334***************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 11.719 | 7 | 48 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.32E-14 | 9 | 55 | No hit | No description |
Pfam | PF00847 | 1.0E-4 | 15 | 48 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.6E-5 | 15 | 68 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.83E-9 | 15 | 51 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.5E-16 | 15 | 49 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 97 aa Download sequence Send to blast |
MVLKNGLDRP VQQAHRHWGS WVCEIHHPLL KTRIWLGTFE TTEDAARAMT RRRGSCVVRG 60 REPTSLTIRT PPCYRLPSFF QLLELPFLFK KLTFSI* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.1835 | 2e-81 | bud| cell culture| flower| fruit| inflorescence| leaf |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM445389 | 1e-88 | AM445389.2 Vitis vinifera contig VV78X118204.11, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020083294.1 | 1e-14 | ethylene-responsive transcription factor ERF003-like | ||||
TrEMBL | D7SVV9 | 7e-65 | D7SVV9_VITVI; Uncharacterized protein | ||||
STRING | VIT_07s0031g00420.t01 | 1e-65 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25190.1 | 3e-17 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01022109001 |