PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01022081001 | ||||||||
Common Name | VIT_07s0031g00220 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | AP2 | ||||||||
Protein Properties | Length: 491aa MW: 54514.3 Da PI: 7.1629 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.4 | 6.2e-17 | 137 | 186 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g GSVIVT01022081001 137 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 186 78*******************......55************************997 PP | |||||||
2 | AP2 | 43.9 | 6.1e-14 | 229 | 279 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+t+ eAa+a+++a+ k +g GSVIVT01022081001 229 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEIEAARAYDKAAIKCNG 279 89********.7******5553..2.26**********99**********99776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 5.6E-9 | 137 | 186 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.24E-15 | 137 | 195 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 7.1E-32 | 138 | 200 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.6E-17 | 138 | 194 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.91E-11 | 138 | 193 | No hit | No description |
PROSITE profile | PS51032 | 17.701 | 138 | 194 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.67E-24 | 229 | 289 | No hit | No description |
Pfam | PF00847 | 1.3E-9 | 229 | 279 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.62E-17 | 229 | 289 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 4.2E-31 | 230 | 293 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.2E-16 | 230 | 287 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.461 | 230 | 287 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.5E-6 | 231 | 242 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.5E-6 | 269 | 289 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010073 | Biological Process | meristem maintenance | ||||
GO:0010093 | Biological Process | specification of floral organ identity | ||||
GO:0048316 | Biological Process | seed development | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 491 aa Download sequence Send to blast |
MWDLNDSPDQ RRDDESEGCS SQKTSNSSSS AVVIEDGSDE EDGERGQRKR SSKIFGFSVT 60 HEDEGEPPVT RQFFPMEESE MGTTSCGGAA AFPRAHWVGV KFCQSEPLNT AGVATAKSLE 120 ASQPLKKSRR GPRSRSSQYR GVTFYRRTGR WESHIWDCGK QVYLGGFDTA HAAARAYDRA 180 AIKFRGVEAD INFSLEDYEE DLKQMGNLTK EEFVHVLRRQ STGFPRGSSK YRGVTLHKCG 240 RWEARMGQFL GKKYVYLGLF DTEIEAARAY DKAAIKCNGK EAVTNFDPSI YENELNSSGN 300 AADHNLDLSL GGSASKQNNL ELGDDSQVVT MDQHSVGMSF EADWRSRGFR PKQEACKSDG 360 DALRRNGYNE METMQLLSHT HLQSPAALKP GEMYRYGQFR RAGETQMLHI LPPQLSSPNY 420 QIQFPSSSNG GRIAVNGGDL SLATNHQQWQ SGPPQLFATA AASSGFPPQM IRPNQQWPQK 480 NGFHSLIRPS * |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.11862 | 0.0 | bud| flower| fruit| inflorescence |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: It is detectable at low levels throughout the shoot apex and at enhanced levels in the inflorescence meristem, young floral buds and throughout the early stages of flower development and organogenesis. During floral organ differentiation it becomes spatially restricted to specific organ, tissue and cell types within the flower. | |||||
Uniprot | TISSUE SPECIFICITY: Sepals, petals, stamens, carpels, developing ovules, inflorescence stem, leaf and stem. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that promotes early floral meristem identity (PubMed:7919989). Is required subsequently for the transition of an inflorescence meristem into a floral meristem (PubMed:1675158). Plays a central role in the specification of floral identity, particularly for the normal development of sepals and petals in the wild-type flower, by spatially controlling the expression domains of multiple floral organ identity genes (PubMed:1675158, PubMed:23034631). Acts as A class cadastral protein by repressing the C class floral homeotic gene AGAMOUS in association with other repressors like LEUNIG and SEUSS (PubMed:1675158). Directly represses AGAMOUS by recruiting the transcriptional corepressor TOPLESS and the histone deacetylase HDA19 (PubMed:23034631). It is also required during seed development (PubMed:1675158). {ECO:0000269|PubMed:1675158, ECO:0000269|PubMed:23034631, ECO:0000269|PubMed:7919989}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by the C class floral homeotic protein AGAMOUS in stamens and carpels. MicroRNA 172 (miRNA172) negatively regulates APETALA2 at the translational level and may modulate its expression pattern. Seems not to be influenced by jasmonate and Alternaria brassicicola. {ECO:0000269|PubMed:12805630, ECO:0000269|PubMed:12893888, ECO:0000269|PubMed:14555699}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ809943 | 0.0 | FJ809943.1 Vitis vinifera cultivar Xiangyue transcription factor APETALA2 (AP2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010652782.1 | 0.0 | PREDICTED: transcription factor APETALA2 isoform X1 | ||||
Swissprot | P47927 | 1e-133 | AP2_ARATH; Floral homeotic protein APETALA 2 | ||||
TrEMBL | F6H4H7 | 0.0 | F6H4H7_VITVI; Uncharacterized protein | ||||
STRING | VIT_07s0031g00220.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP497 | 17 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36920.2 | 1e-128 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01022081001 |
Entrez Gene | 100268051 |