PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01022067001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family WRKY
Protein Properties Length: 281aa    MW: 30352.2 Da    PI: 9.9923
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01022067001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.21.3e-31209266359
                        -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                        D ++WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dpk++++tYegeHnh+
  GSVIVT01022067001 209 DDFSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERALDDPKMLIVTYEGEHNHS 266
                        99************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105333.9E-17159205IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.802.7E-33195266IPR003657WRKY domain
PROSITE profilePS5081131.238202268IPR003657WRKY domain
SuperFamilySSF1182906.02E-27204266IPR003657WRKY domain
SMARTSM007741.9E-38207267IPR003657WRKY domain
PfamPF031063.5E-27209265IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MAVELMMGYR NDGFADKMEE NAVQEAAAGL ESVEKLIRLL SHDGLQGRGG CRRFQVQEGD  60
FSSGSDQNRS RSVQEGSFVL SSQPKRGITG RNGVIDRKDS TTTINFSYSS AISGANSFMS  120
SLTGDTDSKQ PSSSSAFQIT NLSQVSSVGR PPLSSSSMKR KCSSSDNPGS GKCGGSSGRC  180
HCLKRRKMKL KRVVRVPAIS MKMADIPPDD FSWRKYGQKP IKGSPHPRGY YKCSSVRGCP  240
ARKHVERALD DPKMLIVTYE GEHNHSLSVA EAAGLILESS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-22195267273WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.152960.0bud| cell culture| fruit| inflorescence
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: In young, mature and senescent leaves. {ECO:0000269|PubMed:11722756}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4691411e-155AM469141.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X246440.13, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002283219.11e-127PREDICTED: probable WRKY transcription factor 7
SwissprotQ9STX07e-72WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLF6H4G01e-126F6H4G0_VITVI; Uncharacterized protein
STRINGVIT_07s0031g00080.t011e-126(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP8844615
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.18e-53WRKY DNA-binding protein 7