PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01021832001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family Trihelix
Protein Properties Length: 523aa    MW: 59288.1 Da    PI: 6.5597
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01021832001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix50.46e-16119189285
           trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                        W+++evlaL+++r++me+++ +       We+vs+k++e+gf+rs+++Ckek+e+ ++++  + + +k+        +++f++l
  GSVIVT01021832001 119 WSNDEVLALLRIRSSMENWYPDF-----TWEHVSRKLAEQGFKRSAEKCKEKFEQESRYFNTTMNYSKN--------YRFFSEL 189
                        ********************998.....9*******************************987666554........4555555 PP
2trihelix93.71.8e-29374457186
           trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                        rW+++evlaLi++r +++ + ++g +k+plWe++s+ m + g++rs+k+Ckekwen+nk+++k+k+ +kkr s +s+tcpyf+ql 
  GSVIVT01021832001 374 RWPRDEVLALINLRCSLNVEDKEG-AKGPLWERISQGMLALGYKRSAKRCKEKWENINKYFRKTKDVSKKR-SLDSRTCPYFHQLS 457
                        8*****************999998.9********************************************8.9999********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007179.6115172IPR001005SANT/Myb domain
PROSITE profilePS500906.295117170IPR017877Myb-like domain
PfamPF138371.2E-11117192No hitNo description
SMARTSM007170.12371432IPR001005SANT/Myb domain
CDDcd122031.84E-22373437No hitNo description
PfamPF138371.2E-18373457No hitNo description
PROSITE profilePS500906.969374430IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0001158Molecular Functionenhancer sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 523 aa     Download sequence    Send to blast
MFDGVPSDQF HQFVAAAAAA AASSTTSQLQ PPPPSLSFPL HVSSSTFPSF DLYPSGSGGG  60
GGAAAAAHQP LQVPHLLHPL HHHSSAPHKD DQDKEENALV SINLEPQKER SMLDLINPWS  120
NDEVLALLRI RSSMENWYPD FTWEHVSRKL AEQGFKRSAE KCKEKFEQES RYFNTTMNYS  180
KNYRFFSELE ELYHGESPHQ QDVAEKNQKV VEKPNEEDRS LEEDSRNETV VGNPCLETEK  240
VEDKSKGKKR KRHTQNKSFE MFKGFCEAVV SKMMAQQEEM HNKLLEDMVK RDEEKTAREE  300
AWKKQEMDRI NKEIEIREHE QAIAGDRQAT IIGFLKKFTS SNPLEAPTSS RKRPSAPTSF  360
PSITDHRDQE LGKRWPRDEV LALINLRCSL NVEDKEGAKG PLWERISQGM LALGYKRSAK  420
RCKEKWENIN KYFRKTKDVS KKRSLDSRTC PYFHQLSTLY SQGTLVVPSS EAPAPENCLN  480
SSENHSSLPE NQVGGSSSNT NMHAADEGEE NAAQLPAYDF KF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.67570.0fruit
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00011PBMTransfer from AT5G28300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4663210.0AM466321.1 Vitis vinifera contig VV78X023223.6, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002272789.20.0PREDICTED: trihelix transcription factor GTL2
SwissprotQ8H1812e-96GTL2_ARATH; Trihelix transcription factor GTL2
TrEMBLA0A438BQA00.0A0A438BQA0_VITVI; Trihelix transcription factor GTL2
STRINGVIT_14s0030g01860.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1061159
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28300.12e-97Trihelix family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]