PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01021765001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family WRKY
Protein Properties Length: 422aa    MW: 45849.8 Da    PI: 5.2041
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01021765001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.96.6e-31202260259
                        --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                        +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+
  GSVIVT01021765001 202 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 260
                        699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081133.109196262IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.7E-31198262IPR003657WRKY domain
SuperFamilySSF1182902.62E-26199262IPR003657WRKY domain
SMARTSM007741.4E-37201261IPR003657WRKY domain
PfamPF031068.7E-26203260IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MCSYFRQRME NYQGDLADIV RASGSGGART SDEPVADWQF PSEPMIFSPV VDEPLDDFGD  60
PFSNMRDPLL HELGIAGSGF FGSSNSSGGM FGQKILDEDM KRPCNIFSRM LQISPNARMP  120
ISPCESQIVA ASPTGIKTSA LAPNDMISGN SSKGCLMDST ALQISSPRNP GIKRRKSQAK  180
KVVCIPAPAA ANSRPSGEVV PSDLWAWRKY GQKPIKGSPY PRGYYRCSSS KGCSARKQVE  240
RSRTDPNMLV ITYTSEHNHP WPTQRNALAG STRSQPSKNN GASKNSGSCQ STQKATGLKE  300
ENKESYNNDD MSPIVGGSST TGASVKEEMG NVEKQLEMDD SEFSEGFPRS YKPAMPDSNQ  360
SEDFFADLGE IEADPLNLLF AQGFSSGDHE ERESKALDPF SLFDWTGNNS NTSFGEDKRG  420
L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-25176263280Disease resistance protein RRS1
5w3x_D2e-25176263280Disease resistance protein RRS1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00171DAPTransfer from AT1G30650Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4797870.0AM479787.2 Vitis vinifera contig VV78X179414.10, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002269170.10.0PREDICTED: probable WRKY transcription factor 14
TrEMBLA0A438BWU00.0A0A438BWU0_VITVI; Putative WRKY transcription factor 14
STRINGVIT_10s0003g05740.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30650.15e-97WRKY DNA-binding protein 14